Ecosyste.ms: Issues

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GitHub / salvadorgarciamunoz/kipet issues and pull requests

#186 - Error running EX7_concentration input

Issue - State: open - Opened by naidingqi over 1 year ago

#185 - Bump nbconvert from 6.1.0 to 6.5.1

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#184 - Bump nbconvert from 6.1.0 to 6.3.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#183 - Bump mistune from 0.8.4 to 2.0.3

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#182 - Bump ujson from 4.0.2 to 5.4.0

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#181 - Bump numpy from 1.21.0 to 1.22.0

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#180 - Bump ujson from 4.0.2 to 5.2.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#179 - Bump paramiko from 2.7.2 to 2.10.1

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#178 - Bump pillow from 8.2.0 to 9.0.1

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#177 - Bump ujson from 4.0.2 to 5.1.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#176 - Bump ipython from 7.25.0 to 7.31.1

Pull Request - State: open - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies

#175 - Bump pillow from 8.2.0 to 9.0.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#174 - Pyomo 6 breaks fe_factory

Issue - State: open - Opened by kwmcbride about 3 years ago

#173 - Example1 error- is the version 1.0.7 available yet?

Issue - State: open - Opened by timhockswender about 3 years ago - 4 comments

#172 - Ex_7_concentration_input.py giving an error

Issue - State: open - Opened by notesofdabbler about 3 years ago - 6 comments

#171 - AttributeError: module 'kipet' has no attribute 'ReactionModel'

Issue - State: open - Opened by juanmvenegas over 3 years ago - 5 comments

#170 - Error when using report functionality

Issue - State: closed - Opened by notesofdabbler over 3 years ago - 2 comments

#169 - Fixed bug in the new documentation file names

Pull Request - State: closed - Opened by kwmcbride over 3 years ago

#168 - Model refactor

Pull Request - State: closed - Opened by kwmcbride over 3 years ago - 1 comment

#167 - Setup

Pull Request - State: closed - Opened by kwmcbride almost 4 years ago - 1 comment

#166 - Missing Module

Issue - State: closed - Opened by SmithCJ47 almost 4 years ago - 5 comments

#165 - Bug fixes and other units updates

Pull Request - State: closed - Opened by kwmcbride almost 4 years ago

#164 - Plotting Results Error

Issue - State: closed - Opened by SmithCJ47 almost 4 years ago - 4 comments

#163 - Minor syntax updates, Jupyter notebook plot support

Pull Request - State: closed - Opened by kwmcbride almost 4 years ago - 2 comments

#162 - Previous update plus new changes targeting package development

Pull Request - State: closed - Opened by kwmcbride almost 4 years ago

#161 - Better installation method

Issue - State: closed - Opened by kwmcbride almost 4 years ago - 1 comment

#160 - Unittests needed

Issue - State: open - Opened by kwmcbride almost 4 years ago

#159 - New update to KIPET

Pull Request - State: closed - Opened by kwmcbride almost 4 years ago - 1 comment

#158 - Example with difficulty in fitting parameters

Issue - State: closed - Opened by notesofdabbler almost 4 years ago - 6 comments

#157 - How do we add bounds to algebraic variables?

Issue - State: closed - Opened by notesofdabbler almost 4 years ago - 1 comment

#156 - Fix module import bug

Pull Request - State: closed - Opened by kwmcbride almost 4 years ago - 1 comment

#155 - importing KipetModel gives an error

Issue - State: closed - Opened by notesofdabbler almost 4 years ago - 2 comments

#154 - Tutorials Update

Pull Request - State: closed - Opened by kwmcbride almost 4 years ago

#153 - Update kipet_model.py

Pull Request - State: closed - Opened by kwmcbride almost 4 years ago - 1 comment

#152 - Issue with parameter estimation involving dosing

Issue - State: closed - Opened by notesofdabbler almost 4 years ago - 8 comments
Labels: bug

#151 - Increased RH calculation speed, consolidated RH methods, added comments

Pull Request - State: closed - Opened by kwmcbride almost 4 years ago
Labels: enhancement

#150 - Update setup.py

Pull Request - State: closed - Opened by kwmcbride almost 4 years ago - 1 comment

#149 - Update settings.txt

Pull Request - State: closed - Opened by kwmcbride about 4 years ago - 1 comment

#148 - Issue with settings.txt after install

Issue - State: closed - Opened by notesofdabbler about 4 years ago - 3 comments
Labels: bug

#147 - Example 7 using k_aug doesn't seem to be working

Issue - State: closed - Opened by notesofdabbler about 4 years ago - 2 comments
Labels: bug

#146 - Updates to read/write and the separation and update of the EstimationPotential module

Pull Request - State: closed - Opened by kwmcbride about 4 years ago - 1 comment

#145 - Issue when installing from new_data branch

Issue - State: closed - Opened by notesofdabbler about 4 years ago - 7 comments

#144 - New data

Pull Request - State: closed - Opened by kwmcbride about 4 years ago - 11 comments

#143 - New IPOPT installation instructions for Windows

Pull Request - State: closed - Opened by mchlshort about 4 years ago - 3 comments

#142 - How to fit data on algebraic variables

Issue - State: closed - Opened by notesofdabbler about 4 years ago - 11 comments

#141 - Parameter estimation for a fed-batch example not working

Issue - State: closed - Opened by notesofdabbler about 4 years ago - 2 comments

#140 - read_file with directory seems to give an error

Issue - State: closed - Opened by notesofdabbler about 4 years ago - 2 comments

#139 - Traj fix

Pull Request - State: closed - Opened by kwmcbride over 4 years ago

#138 - syntax for estimating sensitivity to parameters

Issue - State: closed - Opened by notesofdabbler over 4 years ago - 2 comments

#137 - Traj fix

Pull Request - State: closed - Opened by kwmcbride over 4 years ago - 1 comment

#136 - Fixing input variables from trajectory

Issue - State: closed - Opened by notesofdabbler over 4 years ago - 4 comments

#135 - Obj update

Pull Request - State: closed - Opened by kwmcbride over 4 years ago - 1 comment

#134 - Handling heterogeneous data in MultipleExperimentsEstimator

Issue - State: closed - Opened by notesofdabbler over 4 years ago - 4 comments

#133 - fixed bug where variance ignored in objective function

Pull Request - State: closed - Opened by kwmcbride over 4 years ago

#131 - Pyomo 5.7

Issue - State: closed - Opened by dthierry over 4 years ago - 7 comments

#130 - Kipet2.0

Pull Request - State: closed - Opened by kwmcbride over 4 years ago - 2 comments

#129 - Fixed missing data issue

Pull Request - State: closed - Opened by kwmcbride over 4 years ago - 1 comment

#127 - Error when running Ex_7_concentration_input.py with just B and C data

Issue - State: closed - Opened by notesofdabbler over 4 years ago - 1 comment

#126 - Getting error when running Ex1_ode_sim.py

Issue - State: closed - Opened by notesofdabbler over 4 years ago - 4 comments

#125 - Estimation refactor model - fixed

Pull Request - State: closed - Opened by kwmcbride over 4 years ago - 1 comment

#124 - Estimation refactor

Pull Request - State: closed - Opened by kwmcbride over 4 years ago - 6 comments

#123 - Refactoring of EstimationPotential to use PyNumero

Pull Request - State: closed - Opened by kwmcbride over 4 years ago

#122 - Parameter estimation with k_aug and non_absorbing species fails

Issue - State: closed - Opened by schenkch over 4 years ago - 1 comment

#121 - Add feature of unwanted contributions

Pull Request - State: closed - Opened by kuanhanl over 4 years ago - 2 comments

#120 - Add feature of unwanted contributions

Pull Request - State: closed - Opened by kuanhanl over 4 years ago

#119 - Estimation

Pull Request - State: closed - Opened by kwmcbride over 4 years ago - 15 comments

#118 - Fix bugs in KIPET when using Pyomo 5.6.8

Pull Request - State: closed - Opened by kuanhanl over 4 years ago

#117 - Fix bugs for pyomo 5.6.8

Pull Request - State: closed - Opened by kuanhanl over 4 years ago

#115 - Pyomo 5.6.8 breaks kipet

Issue - State: closed - Opened by dthierry over 4 years ago - 5 comments

#114 - Create Windows 10 k_aug installation guide w/MA57 & coinIpopt libraries

Issue - State: open - Opened by dthierry almost 5 years ago - 1 comment

#113 - Added Kipet Paper

Pull Request - State: closed - Opened by schenkch almost 5 years ago - 1 comment

#112 - Fixes

Pull Request - State: closed - Opened by schenkch almost 5 years ago - 1 comment

#111 - Update to multiple experiments

Pull Request - State: closed - Opened by mchlshort about 5 years ago

#110 - Initparamest

Pull Request - State: closed - Opened by schenkch about 5 years ago - 2 comments

#109 - Structure for inclusion of H/UPLC data

Pull Request - State: closed - Opened by schenkch about 5 years ago - 3 comments

#108 - Support added for no model variance and new requirements

Pull Request - State: closed - Opened by mchlshort over 5 years ago

#107 - Fixes to fe_factory for latest Pyomo version

Pull Request - State: closed - Opened by mchlshort over 5 years ago

#106 - Update README.md

Pull Request - State: closed - Opened by mchlshort over 5 years ago

#105 - New Sphinx Documentation

Pull Request - State: closed - Opened by mchlshort over 5 years ago
Labels: enhancement

#104 - New Variance Estimator

Pull Request - State: closed - Opened by mchlshort over 5 years ago
Labels: enhancement

#103 - fe_factory "reconstruct" missing odes

Issue - State: closed - Opened by dthierry over 5 years ago - 1 comment

#102 - MultExpEstimation Parameter multiplicity

Issue - State: closed - Opened by dthierry over 5 years ago - 2 comments

#101 - New variance estimation method

Pull Request - State: closed - Opened by mchlshort over 5 years ago

#100 - Updated example 3

Pull Request - State: closed - Opened by schenkch over 5 years ago

#99 - First working version of multiple experiments parameter estimation

Pull Request - State: closed - Opened by mchlshort over 5 years ago
Labels: enhancement

#98 - Paperexample3

Pull Request - State: closed - Opened by schenkch over 5 years ago

#96 - All new features for first stable release now

Pull Request - State: closed - Opened by schenkch over 5 years ago - 3 comments
Labels: enhancement

#95 - New features for first stable release

Pull Request - State: closed - Opened by mchlshort over 5 years ago - 3 comments
Labels: enhancement

#94 - k_aug issue with Windows10

Issue - State: closed - Opened by schenkch over 5 years ago - 5 comments

#93 - Addvarbounds

Pull Request - State: closed - Opened by schenkch over 5 years ago

#92 - Multiple Experiments version 1

Pull Request - State: closed - Opened by mchlshort over 5 years ago
Labels: enhancement

#91 - Fix fix_from_trajectory

Pull Request - State: closed - Opened by schenkch over 5 years ago - 1 comment

#87 - Different measurement types

Issue - State: closed - Opened by mchlshort almost 6 years ago
Labels: enhancement

#84 - Known dependency issues

Issue - State: open - Opened by mchlshort almost 6 years ago - 2 comments
Labels: bug

#78 - Confidence levels

Issue - State: closed - Opened by schenkch almost 6 years ago - 2 comments
Labels: enhancement

#77 - Initparamguess

Pull Request - State: closed - Opened by schenkch almost 6 years ago - 1 comment

#72 - Automate use of fe_factory when dosing regime is used.

Issue - State: closed - Opened by salvadorgarciamunoz about 6 years ago - 2 comments
Labels: enhancement