salesforce/progen issues and pull requests

#47 - Could someone tell me about how to train models?

Issue - State: open - Opened by maoke0603 7 months ago

#46 - Duplicate Sequences with Different runs

Issue - State: open - Opened by jamesrgraham 8 months ago - 1 comment

#45 - CUDA Out of Memory Error When Running sample.py with a large --num-samples

Issue - State: open - Opened by JoshPhd 8 months ago - 2 comments

#44 - How progen handles sequences greater than 2048？

Issue - State: open - Opened by wenyuhaokikika 11 months ago

#43 - what is GB1 (top100avg) ?

Issue - State: open - Opened by wenyuhaokikika 11 months ago

#42 - can somebody please give me the training code of progen2? i want to know how to train the model

Issue - State: open - Opened by leobince about 1 year ago

#41 - Are the tags of the training data avaliable? And where can i find it? Thanks

Issue - State: open - Opened by leobince about 1 year ago

#40 - Control tags not in tokenizer

Issue - State: open - Opened by lhallee about 1 year ago - 1 comment

#39 - Could you please open source the dataset used for pre-training?

Issue - State: open - Opened by Lyu6PosHao about 1 year ago

#38 - Can't find the patch file named 'estimator.patch'

Issue - State: open - Opened by 511515njlkh about 1 year ago

#37 - Training details of discriminator

Issue - State: open - Opened by Lifedecoder about 1 year ago

#36 - fix bugs to enable key_value cache for generation

Pull Request - State: open - Opened by Kaffaljidhmah2 over 1 year ago - 2 comments
Labels: cla:missing

#35 - URL from huggingface

Issue - State: open - Opened by wkeymis over 1 year ago

#34 - Lysozyme dataset needed

Issue - State: open - Opened by SabBottazzi over 1 year ago - 1 comment

#33 - Bump transformers from 4.16.2 to 4.30.0 in /progen2

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#32 - Segmentation fault (core dumped)

Issue - State: open - Opened by lvdongyuan over 1 year ago

#31 - Predicting model for CM and MDH dataset

Issue - State: open - Opened by Tsinghua-gongjing over 1 year ago - 2 comments

#30 - Releasing cleaned version of ProGen1?

Issue - State: open - Opened by canallee over 1 year ago - 1 comment

#29 - How are the results interpreted?

Pull Request - State: closed - Opened by wjq1981 over 1 year ago

#28 - How to generate non-natural sequences of an interest protein using ProGen

Issue - State: open - Opened by Eagan-lau over 1 year ago - 1 comment

#27 - How to generate sequences of a particular family using PROGEN2?

Issue - State: open - Opened by Sireesiru over 1 year ago - 2 comments

#26 - A question about "context"

Issue - State: open - Opened by 1185307269 over 1 year ago - 1 comment

#25 - none

Issue - State: open - Opened by xubocheng almost 2 years ago - 1 comment

#24 - I want to generate unnatural protein sequences from a gene family using Progen2

Issue - State: open - Opened by Seaxingzhou almost 2 years ago - 1 comment

#23 - It looks like the config file at './checkpoints/progen2-large' is not a valid JSON file.

Issue - State: open - Opened by bj600800 almost 2 years ago

#22 - Client Error: Unauthorized for url

Issue - State: closed - Opened by AhmedKazlak almost 2 years ago - 1 comment

#21 - Fine Tuning the Model

Issue - State: open - Opened by cv277 almost 2 years ago - 9 comments

#20 - Models difference

Issue - State: closed - Opened by Dongchengzhi almost 2 years ago

#19 - Runnable model

Issue - State: open - Opened by okaris almost 2 years ago

#18 - Generate sequence based on natural one

Issue - State: open - Opened by avivlazar almost 2 years ago - 3 comments

#17 - Can one protect some fragments during generation

Issue - State: open - Opened by data2code almost 2 years ago

#16 - How is the sequence ID calculated in an efficient manner

Issue - State: open - Opened by eric-jm-lang almost 2 years ago - 1 comment

#15 - How to specify a control tag in the sample script?

Issue - State: open - Opened by LiorZ almost 2 years ago - 3 comments

#14 - Is there a plan on packaging ProGen and its utilities on PyPI or something?

Issue - State: open - Opened by martinez-zacharya almost 2 years ago

#13 - How to obtain Test-max90 and Test-max50?

Issue - State: open - Opened by LGH1gh almost 2 years ago

#12 - How can we extract embedding for a protein sequence?

Issue - State: open - Opened by suresh-pokharel about 2 years ago

#11 - RuntimeError

Issue - State: open - Opened by ZeroKeng about 2 years ago

#10 - Weird behavior with memory usage within samply.py

Issue - State: open - Opened by GrayWasTaken about 2 years ago - 1 comment

#9 - Data for antibody set

Issue - State: open - Opened by oliverdutton over 2 years ago

#8 - Add a sequence classification head to ProtGen2

Issue - State: open - Opened by franzigeiger over 2 years ago - 2 comments

#7 - Sampling conditional token distribution

Issue - State: open - Opened by aiXander over 2 years ago - 1 comment

#6 - avoid user confusion

Pull Request - State: closed - Opened by a-mad over 2 years ago - 1 comment
Labels: cla:missing

GitHub / salesforce/progen issues and pull requests