Ecosyste.ms: Issues

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GitHub / saketkc/gencode_regions issues and pull requests

#13 - gencode 30 and ensembl 97 gtf/gff3 not working

Issue - State: closed - Opened by zyh4482 over 2 years ago - 2 comments

#12 - Promoters?

Issue - State: closed - Opened by c2b2pss about 3 years ago - 1 comment

#11 - Gsoc2021 gtfbase

Pull Request - State: open - Opened by tanishq67 over 3 years ago

#10 - the position of first intron

Issue - State: open - Opened by sixone11 over 3 years ago - 1 comment

#9 - tested pyensembl to download gtf file of dog to generate bed files

Pull Request - State: open - Opened by anamika-yadav99 almost 4 years ago - 1 comment

#8 - Bed file for Felis_Catus9.0

Pull Request - State: closed - Opened by anamika-yadav99 almost 4 years ago - 1 comment

#7 - Updated README.md

Pull Request - State: closed - Opened by tanishq67 almost 4 years ago - 1 comment

#6 - Issues faced while trying to run notebooks

Issue - State: closed - Opened by tanishq67 almost 4 years ago - 2 comments

#5 - can not execute gtfToGenePred

Issue - State: closed - Opened by qicaibiology over 4 years ago - 15 comments
Labels: invalid

#4 - Avoid using scientific notation

Pull Request - State: closed - Opened by bug1303 over 5 years ago - 1 comment

#3 - In your R script (create_regions_from_gencode.R) there is a small bug

Issue - State: open - Opened by Alex-Nesta almost 6 years ago - 5 comments

#2 - Not working with gencode.mm10.vM14.annotation.gtf / gff3

Issue - State: closed - Opened by AMChalkie over 7 years ago - 1 comment

#1 - extra information on the regions

Issue - State: closed - Opened by asifzubair about 8 years ago - 4 comments