saezlab/mistyr issues and pull requests

#46 - Using MISTy on multiple samples

Issue - State: open - Opened by whitneyt1 2 months ago - 2 comments

#45 - Question about juxta and para view

Issue - State: open - Opened by LynnChan99 3 months ago - 1 comment

#44 - Scaling before running linear model

Issue - State: closed - Opened by Zach-Sten 4 months ago - 2 comments

#43 - Question: IMC and single cell resolution ST data

Issue - State: closed - Opened by spatts14 8 months ago - 2 comments

#42 - Small corrections

Pull Request - State: closed - Opened by leotenshii 8 months ago

#41 - Included code chunk

Pull Request - State: closed - Opened by leotenshii 8 months ago

#40 - Added new signature vignette

Pull Request - State: closed - Opened by leotenshii 9 months ago - 2 comments

#39 - removed progeny dependency

Pull Request - State: closed - Opened by leotenshii 9 months ago

#38 - Add files via upload

Pull Request - State: closed - Opened by leotenshii 9 months ago - 2 comments

#37 - Can I merge the results into one?

Issue - State: closed - Opened by LynnChan99 11 months ago - 3 comments

#36 - usage of mistyR for spatial transcriptome cell composition data

Issue - State: closed - Opened by archanabhardwaj about 1 year ago - 1 comment

#35 - obtain the spot ID calculated by the juxta view

Issue - State: closed - Opened by ckfromCN about 1 year ago - 1 comment

#34 - Issue with MistyR Heatmaps

Issue - State: closed - Opened by deconvolute about 1 year ago - 3 comments

#33 - run_misty illegal column names error

Issue - State: closed - Opened by mcaponegro over 1 year ago - 3 comments

#32 - cv.folds in run_misty_seurat()

Issue - State: closed - Opened by deconvolute over 1 year ago

#31 - Fix readr issue

Pull Request - State: closed - Opened by jtanevski almost 2 years ago

#30 - Error in collect_results function

Issue - State: closed - Opened by YaobangWang almost 2 years ago - 1 comment

#28 - Run misty in subset regions of Visium for cell-colocalization analysis with deconvolution output

Issue - State: closed - Opened by lengfei5 almost 2 years ago - 2 comments

#27 - Update pkgdown site to bootstrap 5

Pull Request - State: closed - Opened by deeenes almost 2 years ago

#26 - [BUG] Error in collect_results, performance file not being read correctly

Issue - State: closed - Opened by ggruenhagen3 about 2 years ago - 2 comments

#25 - Visualization of final model

Issue - State: closed - Opened by wangyiqing50 about 2 years ago - 1 comment

#24 - merge changes to gha and docker

Pull Request - State: closed - Opened by jtanevski over 2 years ago

#23 - merge changes to gha and docker

Pull Request - State: closed - Opened by jtanevski over 2 years ago

#22 - Provide view-specific models as function

Pull Request - State: closed - Opened by schae211 over 2 years ago

#21 - An irrecoverable exception occurred. R is aborting now ... Segmentation fault (core dumped)

Issue - State: closed - Opened by HenrikBengtsson over 2 years ago - 1 comment

#20 - TESTS: Failure (test-misty.R:55:3): run_misty handles evaluation parameters correctly

Issue - State: closed - Opened by HenrikBengtsson over 2 years ago - 3 comments

#19 - Devel

Pull Request - State: closed - Opened by nathansteenbuck almost 3 years ago

#18 - [Improvements] Please add the following points to the document

Issue - State: closed - Opened by DenisSch about 3 years ago - 1 comment

#17 - Devel

Pull Request - State: closed - Opened by schae211 about 3 years ago

#16 - added assertion to check for num unique values

Pull Request - State: closed - Opened by schae211 about 3 years ago

#15 - test extract_signature, clean interaction heatmap

Pull Request - State: closed - Opened by schae211 about 3 years ago

#14 - Devel

Pull Request - State: closed - Opened by schae211 about 3 years ago

#13 - Can I add z axis to the location?Consider three-dimensional coordinates.

Issue - State: closed - Opened by xiangrong7 over 3 years ago - 5 comments
Labels: enhancement

#12 - Fixed deprecation of `multiprocess`

Pull Request - State: closed - Opened by Nic-Nic almost 4 years ago - 1 comment
Labels: bug

#11 - Issue installing misty on macOS

Issue - State: closed - Opened by nilseling almost 4 years ago - 2 comments