saezlab/decoupler-py issues and pull requests

#42 - run_mlm function process

Issue - State: closed - Opened by elektrafying2000 over 1 year ago - 2 comments
Labels: question

#41 - [WIP] Add lead_genes and n_genes to enrichment results

Pull Request - State: closed - Opened by pcm32 over 1 year ago - 1 comment

#40 - minor doc fix

Pull Request - State: closed - Opened by fedor-grigoryev over 1 year ago

#39 - plot_psbulk_samples does not exist

Issue - State: closed - Opened by TheBorgy over 1 year ago - 1 comment
Labels: bug

#37 - Please push version 1.4.0 to pypi, only 1.3.4 is available

Issue - State: closed - Opened by pcm32 over 1 year ago - 4 comments
Labels: question

#36 - Is there any plan or ongoing work to add decoupler-py to conda-forge or bioconda?

Issue - State: closed - Opened by pcm32 over 1 year ago - 2 comments
Labels: question

#35 - `LinAlgError: Singular matrix` in `run_mlm` for zebrafish

Issue - State: closed - Opened by fbnrst over 1 year ago - 2 comments
Labels: bug

#34 - TypingError Decoupler Import

Issue - State: closed - Opened by jvogenstahl over 1 year ago - 5 comments
Labels: bug

#32 - Pseudobulk output AnnData retains only index in .var

Issue - State: closed - Opened by vjmarteau over 1 year ago - 1 comment
Labels: bug

#31 - UnboundLocalError in plot_psbul_samples()

Issue - State: closed - Opened by demian1 over 1 year ago - 2 comments
Labels: bug

#30 - Issue with `get_pseudobulk` on a large dataframe

Issue - State: closed - Opened by apredeus over 1 year ago - 2 comments
Labels: question

#29 - Pseudobulk improvements

Issue - State: closed - Opened by grst over 1 year ago - 14 comments
Labels: enhancement, question

#28 - We can not download PROGENy database in decouplerpy.

Issue - State: closed - Opened by DBinary over 1 year ago - 3 comments
Labels: database/omnipath

#27 - Add pseudobulking by median

Issue - State: closed - Opened by Zethson over 1 year ago - 5 comments
Labels: enhancement

#26 - Added the bulk liana analysis at the end of bulk notebook

Pull Request - State: closed - Opened by adugourd over 1 year ago

#25 - Pypath error in species conversion of MSigDB

Issue - State: closed - Opened by LornaWessels over 1 year ago - 4 comments
Labels: database/omnipath

#23 - Are there missing pathways in REACTOME?

Issue - State: closed - Opened by Nusob888 almost 2 years ago - 3 comments
Labels: question

#22 - SSL error

Issue - State: closed - Opened by joseph-siefert almost 2 years ago - 2 comments
Labels: question

#21 - How does a ULM on LFCs from bulk RNA-seq work for TF activity inference?

Issue - State: closed - Opened by adamklie almost 2 years ago - 4 comments
Labels: question

#20 - Differences between wmean and wsum methods

Issue - State: closed - Opened by frankligy almost 2 years ago - 2 comments
Labels: question

#19 - module 'sklearn' has no attribute 'tree'

Issue - State: closed - Opened by frankligy almost 2 years ago
Labels: bug

#18 - CytoSig resource providing incorrect data

Issue - State: closed - Opened by adamgayoso about 2 years ago - 6 comments
Labels: database/omnipath

#17 - Merge benchmark devel branch

Pull Request - State: closed - Opened by PauBadiaM about 2 years ago

#16 - Confidence levels

Issue - State: closed - Opened by ktroule about 2 years ago - 2 comments
Labels: question

#15 - corrected bug in summarize_acts

Pull Request - State: closed - Opened by demian1 about 2 years ago

#14 - https://omnipathdb.org/ is down hence produces error when trying to use decoupler

Issue - State: closed - Opened by tomthomas3000 about 2 years ago - 2 comments
Labels: database/omnipath

#13 - global regulation

Issue - State: closed - Opened by erbsl about 2 years ago - 4 comments
Labels: question

#12 - dc.run_gsva Error

Issue - State: closed - Opened by liujilei156231 about 2 years ago - 3 comments

#11 - summarize_acts Error

Issue - State: closed - Opened by liujilei156231 about 2 years ago - 4 comments

#10 - MSigDB Loading Error

Issue - State: closed - Opened by liujilei156231 about 2 years ago - 7 comments
Labels: database/omnipath

#9 - Error importing Progeny

Issue - State: closed - Opened by alberto-valdeolivas about 2 years ago - 5 comments
Labels: version

#8 - Benchmark dev

Pull Request - State: closed - Opened by demian1 about 2 years ago

#7 - PanglaoDB

Issue - State: closed - Opened by luglilab over 2 years ago - 1 comment

#6 - which data to use to infer TF Activity

Issue - State: closed - Opened by wariobrega over 2 years ago - 2 comments
Labels: question

#5 - Mouse genes

Issue - State: closed - Opened by laurie-tonon over 2 years ago - 12 comments

#4 - run_mdt: module has no attribute

Issue - State: closed - Opened by erbsl over 2 years ago - 2 comments

#3 - PanglaoDB tutorial doesn't work

Issue - State: closed - Opened by Intron7 over 2 years ago - 3 comments
Labels: bug

#2 - Pseudobulk issue?

Issue - State: closed - Opened by jackbrougher over 2 years ago - 4 comments
Labels: bug

#1 - Benchmarking analogous to decoupleRBench

Issue - State: closed - Opened by erbsl over 2 years ago - 3 comments
Labels: question

GitHub / saezlab/decoupler-py issues and pull requests