Ecosyste.ms: Issues

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GitHub / saezlab/collectri issues and pull requests

#23 - omnipathdb.org is down

Issue - State: closed - Opened by karJac 4 months ago

#23 - omnipathdb.org is down

Issue - State: closed - Opened by karJac 4 months ago

#22 - OmnipathR::collectri(organism=9606L, genesymbols=TRUE, loops=TRUE) ERROR

Issue - State: closed - Opened by LorNic97 4 months ago - 2 comments

#22 - OmnipathR::collectri(organism=9606L, genesymbols=TRUE, loops=TRUE) ERROR

Issue - State: closed - Opened by LorNic97 4 months ago - 2 comments

#21 - decoupleR::get_collectri error

Issue - State: open - Opened by cf98 4 months ago - 15 comments

#20 - Missing TF in mouse TRI network

Issue - State: closed - Opened by thnbio 7 months ago - 1 comment

#19 - decoupleR::get_collectri 403 error

Issue - State: closed - Opened by mfranke-2 8 months ago - 6 comments

#18 - CollecTRI interaction confidence level and reference retrieval

Issue - State: closed - Opened by Sophon-0 9 months ago - 1 comment

#17 - commercial use of collectri

Issue - State: closed - Opened by annarerra 9 months ago - 3 comments

#16 - problem with collectri package in R

Issue - State: closed - Opened by annarerra 9 months ago - 2 comments

#15 - How to filter non-academic use license resources

Issue - State: closed - Opened by romunov 10 months ago - 4 comments

#14 - Loading mouse regulons returns human regulons

Issue - State: closed - Opened by annasen about 1 year ago - 11 comments

#13 - What are the differences between raw regulons and processed regulons?

Issue - State: closed - Opened by feather-W about 1 year ago - 2 comments

#12 - decoupleR::get_collectri() returns always human regulons

Issue - State: closed - Opened by riederd over 1 year ago - 3 comments

#11 - Fixed readme

Pull Request - State: closed - Opened by PauBadiaM over 1 year ago

#10 - Error in collectri example

Issue - State: closed - Opened by pietrisko over 1 year ago - 2 comments

#9 - ValueError: Invalid value `loops` for `InteractionsQuery`. Valid options are

Issue - State: closed - Opened by nbutyrate over 1 year ago - 9 comments

#8 - High activity but no expression of a TF

Issue - State: closed - Opened by BastiDucreux over 1 year ago - 2 comments

#6 - Question about estimating TF activity

Issue - State: closed - Opened by joan-yanqiong almost 2 years ago - 1 comment

#5 - fixed file paths and mislabelled columns

Pull Request - State: closed - Opened by robinfallegger almost 2 years ago

#4 - code review and bug fixing

Pull Request - State: closed - Opened by robinfallegger almost 2 years ago

#3 - attempt to remove SettingWithCopyWarning

Pull Request - State: closed - Opened by robinfallegger almost 2 years ago

#2 - added conda environment with dependencies

Pull Request - State: closed - Opened by robinfallegger almost 2 years ago

#1 - fixed typo and GRN bug in weights

Pull Request - State: closed - Opened by robinfallegger almost 2 years ago