Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / saezlab/carnival issues and pull requests

#100 - Feature Request: Omnipath network from original paper

Issue - State: closed - Opened by josiahbjorgaard 9 months ago - 2 comments

#100 - Feature Request: Omnipath network from original paper

Issue - State: closed - Opened by josiahbjorgaard 9 months ago - 2 comments

#99 - General Recommendations for preprocessing RNA-Seq data

Issue - State: closed - Opened by nijibabulu 9 months ago - 2 comments

#99 - General Recommendations for preprocessing RNA-Seq data

Issue - State: closed - Opened by nijibabulu 9 months ago - 2 comments

#98 - Using custom network for transcription factor input

Issue - State: closed - Opened by Sharm8 over 1 year ago - 11 comments

#98 - Using custom network for transcription factor input

Issue - State: closed - Opened by Sharm8 over 1 year ago - 11 comments

#97 - added Rosa's network visualisation function

Pull Request - State: open - Opened by adugourd almost 2 years ago

#96 - added prune_network function

Pull Request - State: closed - Opened by adugourd almost 2 years ago

#96 - added prune_network function

Pull Request - State: closed - Opened by adugourd almost 2 years ago

#95 - [BUG] Your bug or feature request

Issue - State: closed - Opened by LorNic97 almost 2 years ago - 3 comments

#95 - [BUG] Your bug or feature request

Issue - State: closed - Opened by LorNic97 almost 2 years ago - 3 comments

#94 - Transcription factors (TFs) absent from final carnival result

Issue - State: closed - Opened by anu-bioinfo about 2 years ago - 12 comments

#94 - Transcription factors (TFs) absent from final carnival result

Issue - State: closed - Opened by anu-bioinfo about 2 years ago - 12 comments

#93 - Carnival usage error

Issue - State: closed - Opened by rengulA over 2 years ago - 2 comments

#93 - Carnival usage error

Issue - State: closed - Opened by rengulA over 2 years ago - 2 comments

#92 - typo in DESCRIPTION

Pull Request - State: closed - Opened by deeenes over 2 years ago - 1 comment

#92 - typo in DESCRIPTION

Pull Request - State: closed - Opened by deeenes over 2 years ago - 1 comment

#91 - error running Carnival with cbc solver

Issue - State: closed - Opened by elcamb over 2 years ago - 1 comment

#91 - error running Carnival with cbc solver

Issue - State: closed - Opened by elcamb over 2 years ago - 1 comment

#90 - Description about the output

Issue - State: closed - Opened by harimchun over 2 years ago - 4 comments

#90 - Description about the output

Issue - State: closed - Opened by harimchun over 2 years ago - 4 comments

#89 - progenyMembers.RData

Issue - State: closed - Opened by anikaliu over 2 years ago - 2 comments

#89 - progenyMembers.RData

Issue - State: closed - Opened by anikaliu over 2 years ago - 2 comments

#88 - Error in file(file, "rt"): cannot open the connection

Issue - State: closed - Opened by whiteorchid almost 3 years ago - 2 comments

#88 - Error in file(file, "rt"): cannot open the connection

Issue - State: closed - Opened by whiteorchid almost 3 years ago - 2 comments

#87 - Dev

Pull Request - State: closed - Opened by gabora almost 3 years ago

#87 - Dev

Pull Request - State: closed - Opened by gabora almost 3 years ago

#86 - Adding GH actions + fix bioccheck errors/warnings

Pull Request - State: closed - Opened by gabora almost 3 years ago

#85 - Fix biocchecks

Pull Request - State: closed - Opened by gabora almost 3 years ago

#85 - Fix biocchecks

Pull Request - State: closed - Opened by gabora almost 3 years ago

#84 - Add gh actions

Pull Request - State: closed - Opened by gabora almost 3 years ago - 1 comment

#84 - Add gh actions

Pull Request - State: closed - Opened by gabora almost 3 years ago - 1 comment

#82 - runCARNIVAL

Issue - State: closed - Opened by fereshtehvosta almost 3 years ago - 1 comment

#82 - runCARNIVAL

Issue - State: closed - Opened by fereshtehvosta almost 3 years ago - 1 comment

#81 - Fix workdir

Pull Request - State: closed - Opened by gabora almost 3 years ago

#81 - Fix workdir

Pull Request - State: closed - Opened by gabora almost 3 years ago

#80 - Failing tests because local files were used

Issue - State: closed - Opened by gabora almost 3 years ago - 1 comment

#80 - Failing tests because local files were used

Issue - State: closed - Opened by gabora almost 3 years ago - 1 comment

#79 - there is a unhandled error if the output folder does not exist. This …

Pull Request - State: closed - Opened by gabora almost 3 years ago - 2 comments

#79 - there is a unhandled error if the output folder does not exist. This …

Pull Request - State: closed - Opened by gabora almost 3 years ago - 2 comments

#78 - Some issues

Issue - State: closed - Opened by fereshtehvosta almost 3 years ago - 2 comments

#78 - Some issues

Issue - State: closed - Opened by fereshtehvosta almost 3 years ago - 2 comments

#77 - How to use CARNIVAL to fit multiple conditions data

Issue - State: closed - Opened by olapuentesantana about 3 years ago - 2 comments
Labels: enhancement

#77 - How to use CARNIVAL to fit multiple conditions data

Issue - State: closed - Opened by olapuentesantana about 3 years ago - 2 comments
Labels: enhancement

#76 - Updated the vignette with information on Gurobi.

Pull Request - State: closed - Opened by BartoszBartmanski over 3 years ago

#76 - Updated the vignette with information on Gurobi.

Pull Request - State: closed - Opened by BartoszBartmanski over 3 years ago

#75 - Gurobi needs documentation

Issue - State: closed - Opened by gabora over 3 years ago

#75 - Gurobi needs documentation

Issue - State: closed - Opened by gabora over 3 years ago

#74 - No DOT figure

Issue - State: closed - Opened by harrytr over 3 years ago - 1 comment

#74 - No DOT figure

Issue - State: closed - Opened by harrytr over 3 years ago - 1 comment

#73 - Reported 0 for perturbations activity

Issue - State: closed - Opened by ivanovaos over 3 years ago - 1 comment

#73 - Reported 0 for perturbations activity

Issue - State: closed - Opened by ivanovaos over 3 years ago - 1 comment

#71 - Fix for getting multiple solutions from gurobi solver.

Pull Request - State: closed - Opened by BartoszBartmanski over 3 years ago

#71 - Fix for getting multiple solutions from gurobi solver.

Pull Request - State: closed - Opened by BartoszBartmanski over 3 years ago

#70 - Another version(V3) of the function that creates constraints 6 and 7

Pull Request - State: closed - Opened by dingquanyu over 3 years ago - 3 comments

#70 - Another version(V3) of the function that creates constraints 6 and 7

Pull Request - State: closed - Opened by dingquanyu over 3 years ago - 3 comments

#69 - Wrong column name inside the measurementsDf?

Issue - State: closed - Opened by dingquanyu over 3 years ago - 1 comment

#69 - Wrong column name inside the measurementsDf?

Issue - State: closed - Opened by dingquanyu over 3 years ago - 1 comment

#68 - Update solvers_cplex__solve_cplex.R

Pull Request - State: closed - Opened by pierremj over 3 years ago

#68 - Update solvers_cplex__solve_cplex.R

Pull Request - State: closed - Opened by pierremj over 3 years ago

#67 - Added distributed gurobi.

Pull Request - State: closed - Opened by BartoszBartmanski over 3 years ago

#67 - Added distributed gurobi.

Pull Request - State: closed - Opened by BartoszBartmanski over 3 years ago

#65 - Very different results with latest CARNIVAL release

Issue - State: closed - Opened by laylagerami over 3 years ago - 5 comments

#65 - Very different results with latest CARNIVAL release

Issue - State: closed - Opened by laylagerami over 3 years ago - 5 comments

#64 - Writing cplex command file -> error thrown

Issue - State: closed - Opened by ulrmu over 3 years ago - 23 comments

#64 - Writing cplex command file -> error thrown

Issue - State: closed - Opened by ulrmu over 3 years ago - 23 comments

#62 - CBC multithreading arguments

Issue - State: closed - Opened by ahmedasadik over 3 years ago - 2 comments

#62 - CBC multithreading arguments

Issue - State: closed - Opened by ahmedasadik over 3 years ago - 2 comments

#61 - Running carnival in parallel

Issue - State: closed - Opened by ahmedasadik over 3 years ago - 7 comments

#61 - Running carnival in parallel

Issue - State: closed - Opened by ahmedasadik over 3 years ago - 7 comments

#60 - Add Matteo Presentation

Pull Request - State: closed - Opened by MatteoSpatuzzi over 3 years ago

#60 - Add Matteo Presentation

Pull Request - State: closed - Opened by MatteoSpatuzzi over 3 years ago

#59 - Devel 2 1

Pull Request - State: closed - Opened by MatteoSpatuzzi over 3 years ago

#59 - Devel 2 1

Pull Request - State: closed - Opened by MatteoSpatuzzi over 3 years ago

#58 - fixing issue with negative constrains for lp solve

Pull Request - State: closed - Opened by gabora over 3 years ago

#58 - fixing issue with negative constrains for lp solve

Pull Request - State: closed - Opened by gabora over 3 years ago

#57 - Testing constraints

Pull Request - State: closed - Opened by MatteoSpatuzzi almost 4 years ago - 1 comment

#57 - Testing constraints

Pull Request - State: closed - Opened by MatteoSpatuzzi almost 4 years ago - 1 comment

#56 - First test for constraints

Pull Request - State: closed - Opened by MatteoSpatuzzi almost 4 years ago - 1 comment

#56 - First test for constraints

Pull Request - State: closed - Opened by MatteoSpatuzzi almost 4 years ago - 1 comment

#55 - minor fixes, updating the exporting code to be in line with the previ…

Pull Request - State: closed - Opened by ivanovaos almost 4 years ago

#55 - minor fixes, updating the exporting code to be in line with the previ…

Pull Request - State: closed - Opened by ivanovaos almost 4 years ago

#54 - Error in resList[[1]] : subscript out of bounds

Issue - State: closed - Opened by ivanovaos almost 4 years ago

#54 - Error in resList[[1]] : subscript out of bounds

Issue - State: closed - Opened by ivanovaos almost 4 years ago

#53 - Details about output

Issue - State: closed - Opened by asumann almost 4 years ago - 6 comments

#53 - Details about output

Issue - State: closed - Opened by asumann almost 4 years ago - 6 comments

#52 - Bioconductor update?

Issue - State: closed - Opened by gabora almost 4 years ago - 1 comment

#52 - Bioconductor update?

Issue - State: closed - Opened by gabora almost 4 years ago - 1 comment

#51 - ILP issue

Issue - State: closed - Opened by asumann almost 4 years ago - 11 comments

#51 - ILP issue

Issue - State: closed - Opened by asumann almost 4 years ago - 11 comments

#50 - missing mouse progeny data

Issue - State: closed - Opened by Semple-bio almost 4 years ago - 1 comment

#50 - missing mouse progeny data

Issue - State: closed - Opened by Semple-bio almost 4 years ago - 1 comment