Ecosyste.ms: Issues

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GitHub / s312569/clj-biosequence issues and pull requests

#35 - Genbank record as map?

Issue - State: open - Opened by averagehat about 9 years ago - 3 comments

#34 - Continuous Integration

Issue - State: closed - Opened by averagehat about 9 years ago - 1 comment

#33 - Auto-capitalize checked alphabets

Pull Request - State: closed - Opened by averagehat about 9 years ago - 1 comment

#32 - Regression in 0.4.3 failed parsing

Issue - State: closed - Opened by averagehat about 9 years ago - 2 comments

#31 - Sequence as plain string

Issue - State: open - Opened by averagehat about 9 years ago - 1 comment

#30 - Gap characters in sequences?

Issue - State: closed - Opened by metasoarous over 9 years ago - 2 comments

#29 - Non-XML Genbank support?

Issue - State: open - Opened by metasoarous almost 10 years ago - 1 comment

#28 - Curious why you didn't use instaparse for parsing

Issue - State: open - Opened by metasoarous almost 10 years ago - 8 comments

#27 - Phylogenetics within scope?

Issue - State: open - Opened by metasoarous almost 10 years ago - 5 comments

#26 - Nexus format?

Issue - State: open - Opened by metasoarous almost 10 years ago - 1 comment

#25 - indexed blast parameters

Issue - State: open - Opened by s312569 about 10 years ago

#24 - fix indexes so they can be moved

Issue - State: closed - Opened by s312569 over 10 years ago

#22 - remove newlines from bioseq->string

Issue - State: closed - Opened by s312569 over 10 years ago

#21 - fix print alignment - needs to return a string not print

Issue - State: closed - Opened by s312569 over 10 years ago

#20 - File level alphabet functions

Issue - State: open - Opened by s312569 over 10 years ago

#19 - Index signalp

Issue - State: open - Opened by s312569 over 10 years ago

#18 - TMHMM needs redesigning to be more like signalp

Issue - State: open - Opened by s312569 almost 11 years ago

#17 - Disallowed parameters for signalp and blast

Issue - State: open - Opened by s312569 almost 11 years ago

#16 - Blast parameter accessors don't work

Issue - State: closed - Opened by s312569 almost 11 years ago

#15 - Documentation!!

Issue - State: open - Opened by s312569 almost 11 years ago - 4 comments

#14 - IO for zip files

Issue - State: closed - Opened by s312569 almost 11 years ago

#13 - Genbank citations don't use citation class

Issue - State: closed - Opened by s312569 almost 11 years ago

#12 - Type hinting of sequence arrays?

Issue - State: closed - Opened by s312569 almost 11 years ago

#11 - Blast alignment broken

Issue - State: closed - Opened by s312569 almost 11 years ago

#10 - Signalp error handling

Issue - State: closed - Opened by s312569 almost 11 years ago

#9 - Blast indexing interface doesn't make sense

Issue - State: closed - Opened by s312569 almost 11 years ago

#8 - Persistence documentation

Issue - State: closed - Opened by s312569 over 11 years ago
Labels: enhancement

#7 - Better way of handling blast files after searching finished.

Issue - State: closed - Opened by s312569 over 11 years ago
Labels: enhancement

#6 - Object update mechanism

Issue - State: closed - Opened by s312569 over 11 years ago
Labels: enhancement

#5 - Tests

Issue - State: closed - Opened by s312569 over 11 years ago
Labels: bug

#4 - Genbank web access

Issue - State: closed - Opened by s312569 over 11 years ago
Labels: bug

#3 - Wrong exception

Issue - State: closed - Opened by s312569 over 11 years ago
Labels: bug

#2 - Documentation

Issue - State: closed - Opened by s312569 over 11 years ago
Labels: enhancement

#1 - Search functions need to return counts

Issue - State: closed - Opened by s312569 over 11 years ago
Labels: enhancement