Ecosyste.ms: Issues

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GitHub / rvhonorato/cazy-parser issues and pull requests

#43 - Retrieve only the experimentally characterized cazy

Pull Request - State: closed - Opened by rvhonorato over 1 year ago
Labels: bug

#42 - Retrieve only the experimentally characterized cazy?

Issue - State: closed - Opened by BinhongLiu over 1 year ago - 2 comments
Labels: bug

#41 - Fix dev dependencies versions

Pull Request - State: closed - Opened by rvhonorato over 1 year ago - 1 comment

#40 - Bump requests from 2.28.2 to 2.29.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#39 - Bump coverage from 7.2.3 to 7.2.5

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#38 - Bump hypothesis from 6.72.0 to 6.75.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#37 - Bump hypothesis from 6.72.0 to 6.72.2

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#36 - Bump pytest from 7.3.0 to 7.3.1

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#35 - Bump hypothesis from 6.71.0 to 6.72.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#34 - Bump beautifulsoup4 from 4.12.0 to 4.12.2

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#33 - Bump pytest from 7.2.2 to 7.3.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#32 - Bump hypothesis from 6.70.2 to 6.71.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#31 - Bump coverage from 7.2.2 to 7.2.3

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#30 - Bump hypothesis from 6.70.0 to 6.70.2

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#29 - Bump beautifulsoup4 from 4.11.2 to 4.12.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#28 - Bump coverage from 7.2.1 to 7.2.2

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#27 - Bump hypothesis from 6.68.3 to 6.70.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#26 - use `poetry`

Pull Request - State: closed - Opened by rvhonorato almost 2 years ago

#25 - use `trunk` for linting

Pull Request - State: closed - Opened by rvhonorato almost 2 years ago

#24 - add fallback when sequences cannot be downloaded

Pull Request - State: closed - Opened by rvhonorato almost 2 years ago
Labels: bug

#23 - Skip fasta fetching if entrez endpoint is not accessible

Issue - State: closed - Opened by rvhonorato almost 2 years ago
Labels: bug

#22 - Bump certifi from 2022.5.18.1 to 2022.12.7

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 3 comments
Labels: dependencies

#21 - Retrieve structures

Issue - State: open - Opened by rvhonorato over 2 years ago
Labels: enhancement, help wanted

#20 - remove test dependency on family size

Pull Request - State: closed - Opened by rvhonorato over 2 years ago
Labels: bug, testing

#19 - Tests dependent on hardcoded family size

Issue - State: closed - Opened by rvhonorato over 2 years ago
Labels: bug, testing

#18 - Errors occurred using pip installation

Issue - State: closed - Opened by bj600800 over 2 years ago - 2 comments
Labels: bug

#16 - Implement v2.0.0

Pull Request - State: closed - Opened by rvhonorato over 2 years ago
Labels: enhancement, testing

#15 - code-wide linting

Pull Request - State: closed - Opened by rvhonorato over 2 years ago
Labels: testing

#14 - Add linting/testing actions

Pull Request - State: closed - Opened by rvhonorato over 2 years ago

#13 - fail on create_cazy_db

Issue - State: closed - Opened by jtamames almost 6 years ago - 3 comments
Labels: support

#12 - bugfix to account for missing ids

Pull Request - State: closed - Opened by rvhonorato almost 6 years ago

#11 - AttributeError while parsing

Issue - State: closed - Opened by Geize almost 6 years ago - 2 comments
Labels: bug

#10 - hot fix on bars

Pull Request - State: closed - Opened by rvhonorato about 6 years ago

#9 - port to Python 3.x?

Issue - State: closed - Opened by phiweger about 6 years ago - 4 comments
Labels: enhancement

#8 - code cleaning

Pull Request - State: closed - Opened by rvhonorato over 6 years ago

#7 - aesthetics and progress bars

Pull Request - State: closed - Opened by rvhonorato over 6 years ago

#6 - not all members extracted

Issue - State: closed - Opened by geo80 over 6 years ago - 2 comments
Labels: invalid, question

#5 - updated page indexes identification

Pull Request - State: closed - Opened by rvhonorato over 7 years ago

#4 - `create_cazy_db` fails

Issue - State: closed - Opened by lonsbio over 7 years ago - 2 comments

#3 - Update paper.md

Pull Request - State: closed - Opened by arfon about 8 years ago

#2 - organizing as a setup.py compatible project for pypi etc

Issue - State: closed - Opened by jkahn over 8 years ago - 1 comment
Labels: enhancement

#1 - Fixing formatting so paper will compile :-)

Pull Request - State: closed - Opened by arfon over 8 years ago - 1 comment