Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / rust-bio/rust-bio issues and pull requests
#591 - POA consensus seems incorrect
Issue -
State: closed - Opened by davidlougheed 19 days ago
- 1 comment
#590 - deps: update itertools requirement from >=0.8, <0.13 to >=0.8, <0.14
Pull Request -
State: open - Opened by dependabot[bot] about 1 month ago
Labels: dependencies
#589 - Integration of `PDBTBX`
Issue -
State: open - Opened by OWissett about 2 months ago
#588 - deps: update strum requirement from >= 0.16, < 0.26 to >= 0.16, < 0.27
Pull Request -
State: open - Opened by dependabot[bot] about 2 months ago
Labels: dependencies
#587 - deps: update multimap requirement from >=0.6, <0.10 to >=0.6, <0.11
Pull Request -
State: open - Opened by dependabot[bot] about 2 months ago
Labels: dependencies
#586 - deps: update strum_macros requirement from >= 0.16, < 0.26 to >= 0.16, < 0.27
Pull Request -
State: open - Opened by dependabot[bot] about 2 months ago
Labels: dependencies
#585 - chore(master): release 1.6.1
Pull Request -
State: open - Opened by github-actions[bot] about 2 months ago
Labels: autorelease: pending
#584 - fix: Fix clippy warnings
Pull Request -
State: open - Opened by albertsgarde 3 months ago
#583 - "Error(Deserialize" when reading records from file
Issue -
State: closed - Opened by simonharnqvist 3 months ago
- 2 comments
#582 - fix: Remove unnecessary and unsound use of unsafe
Pull Request -
State: open - Opened by albertsgarde 3 months ago
#581 - Unnecessary and unsound use of unsafe
Issue -
State: open - Opened by albertsgarde 3 months ago
- 1 comment
#580 - ci: allow deps as semantic PR title prefix
Pull Request -
State: closed - Opened by dcroote 3 months ago
#579 - Strange Behavior of the fasta reader module
Issue -
State: closed - Opened by Guelakais 4 months ago
- 5 comments
#578 - Performance issues with the pairwise alignment module
Issue -
State: closed - Opened by Guelakais 4 months ago
- 8 comments
#577 - fix: Make LogProb comparable
Pull Request -
State: open - Opened by Addimator 4 months ago
#576 - Which alignment algorithm is which?
Issue -
State: closed - Opened by Guelakais 4 months ago
- 3 comments
#575 - fix: POA reverse edge fix
Pull Request -
State: open - Opened by lorewar2 4 months ago
- 11 comments
#574 - Question : how to get all the elements of Dbxref
Issue -
State: open - Opened by simonpenel 5 months ago
#573 - chore: release 1.6.0
Pull Request -
State: closed - Opened by github-actions[bot] 5 months ago
- 1 comment
Labels: autorelease: tagged
#572 - POA panics on some sets of sequences
Issue -
State: open - Opened by davidlougheed 5 months ago
- 8 comments
#571 - POA method to get aligned sequences with gaps back?
Issue -
State: open - Opened by davidlougheed 5 months ago
- 3 comments
#570 - Question: How does the rust-bio distance module handle ambiguous bases?
Issue -
State: closed - Opened by nrminor 5 months ago
- 2 comments
#569 - feat: POA semi-global, local, and custom alignment
Pull Request -
State: closed - Opened by lorewar2 6 months ago
#568 - POA end gap/semi-global alignment
Issue -
State: open - Opened by ctsa 6 months ago
- 7 comments
#567 - refactor: remove getset
Pull Request -
State: closed - Opened by serprex 6 months ago
#566 - fix(ci): Fix Dependabot
Pull Request -
State: closed - Opened by sjackman 7 months ago
- 2 comments
#565 - deps: update ordered-float requirement from 3.1 to 4.2
Pull Request -
State: open - Opened by dependabot[bot] 7 months ago
- 4 comments
Labels: dependencies
#564 - chore: release 1.5.0
Pull Request -
State: closed - Opened by github-actions[bot] 7 months ago
- 1 comment
Labels: autorelease: tagged
#563 - feat: Add pretty output for poa
Pull Request -
State: closed - Opened by lorewar2 7 months ago
- 1 comment
#562 - deps: update itertools requirement from >=0.8, <0.12 to >=0.8, <0.13
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
- 6 comments
Labels: dependencies
#561 - Fixing cdylib
Pull Request -
State: closed - Opened by mwiewior 8 months ago
#560 - chore: release 1.4.1
Pull Request -
State: closed - Opened by github-actions[bot] 8 months ago
Labels: autorelease: pending
#559 - Update statrs version to 0.16 to avoid future rust incompatibility
Issue -
State: open - Opened by robinpaul85 8 months ago
#558 - fix: minimum ndarray version is 0.15
Pull Request -
State: closed - Opened by dcroote 8 months ago
#557 - chore: temporarily disable coverage estimation until simd support has arrived in the stable rust stdlib
Pull Request -
State: closed - Opened by johanneskoester 9 months ago
#556 - Compat error with array depencency
Issue -
State: closed - Opened by jakobnissen 9 months ago
- 2 comments
#555 - deps: update ordered-float requirement from 3.1 to 4.1
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
- 1 comment
Labels: dependencies
#554 - chore: fix cargo tarpaulin usage
Pull Request -
State: open - Opened by johanneskoester 10 months ago
#553 - chore: fix MSRV
Pull Request -
State: closed - Opened by johanneskoester 10 months ago
#552 - fix: memory efficient poa bug fix
Pull Request -
State: closed - Opened by lorewar2 10 months ago
- 2 comments
#551 - chore: release 1.4.0
Pull Request -
State: closed - Opened by github-actions[bot] 10 months ago
- 1 comment
Labels: autorelease: tagged
#550 - feat: added public function for construction of suffix array from integer alphabets
Pull Request -
State: open - Opened by andynet 10 months ago
#549 - POA index out of bounds
Issue -
State: open - Opened by wdecoster 10 months ago
- 26 comments
#548 - RankSelect uses double the space needed
Issue -
State: open - Opened by jorgehermo9 11 months ago
#547 - Pretty format for multiple sequence alignment with POA
Issue -
State: closed - Opened by jhrcook 11 months ago
- 1 comment
#546 - Cargo.toml instructions should suggest `bio = "1"` instead of `bio = "*"`
Issue -
State: open - Opened by ChaiTRex 11 months ago
#545 - Select operation on RankSelect structure may be broken
Issue -
State: open - Opened by jorgehermo9 12 months ago
#544 - action-semantic-pull-request does not accept 'deps' as type
Issue -
State: closed - Opened by dcroote 12 months ago
- 2 comments
#543 - Coverage CI test failing due to compiler bug (being addressed upstream)
Issue -
State: open - Opened by dlaehnemann 12 months ago
- 1 comment
#542 - fix: make dependabot commit message follow conventional commits
Pull Request -
State: closed - Opened by dlaehnemann 12 months ago
- 3 comments
#541 - build(deps): update multimap requirement from >=0.6, <0.9 to >=0.6, <0.10
Pull Request -
State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies
#540 - build(deps): update enum-map requirement from >=0.6.4, <2 to >=0.6.4, <3
Pull Request -
State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies
#539 - feat: Blastn with http request
Pull Request -
State: open - Opened by CaroCardozo 12 months ago
- 2 comments
#538 - fix: Expand path variables when reading `fasta` files
Pull Request -
State: closed - Opened by nleroy917 12 months ago
- 3 comments
#537 - chore: release 1.3.2
Pull Request -
State: closed - Opened by github-actions[bot] about 1 year ago
Labels: autorelease: pending
#536 - ci: Add dependabot
Pull Request -
State: closed - Opened by SKY-ALIN about 1 year ago
- 11 comments
#535 - build(deps): bump strum from 0.24.1 0.25.0
Pull Request -
State: closed - Opened by sjackman about 1 year ago
- 4 comments
#534 - build(deps): Depend on itertools >=0.8, <0.12
Pull Request -
State: closed - Opened by sjackman about 1 year ago
- 3 comments
#533 - fix: include `doctests` in the test coverage of code that tarpaulin calculates
Pull Request -
State: closed - Opened by dlaehnemann about 1 year ago
- 4 comments
#532 - feat: memory efficient banded poa
Pull Request -
State: closed - Opened by lorewar2 about 1 year ago
- 1 comment
#531 - docs: don't use wildcard version, replace 'extern crate' with 'use'
Pull Request -
State: closed - Opened by yjhn about 1 year ago
- 1 comment
#530 - chore: release 1.3.1
Pull Request -
State: closed - Opened by github-actions[bot] about 1 year ago
- 2 comments
Labels: autorelease: tagged
#529 - chore: release 1.3.0
Pull Request -
State: closed - Opened by github-actions[bot] about 1 year ago
- 1 comment
Labels: autorelease: tagged
#528 - chore: update MSRV
Pull Request -
State: closed - Opened by johanneskoester about 1 year ago
- 1 comment
#527 - feat: Addition of Transcribe and Translate features
Pull Request -
State: open - Opened by Cardosaum about 1 year ago
- 1 comment
#526 - [Feature Request] Add Transcription & Translation capabilities
Issue -
State: open - Opened by Cardosaum about 1 year ago
#525 - feat: Consensus sequence from partial order alignment graph
Pull Request -
State: closed - Opened by lorewar2 about 1 year ago
#524 - feat: update to bio-types 1.0
Pull Request -
State: closed - Opened by johanneskoester about 1 year ago
- 1 comment
#523 - chore: release 1.2.0
Pull Request -
State: closed - Opened by github-actions[bot] about 1 year ago
- 1 comment
Labels: autorelease: tagged
#522 - perf: improve alignment::distance::levenshtein and alignment::distance::bounded_levenshtein on strrings where distance is small
Pull Request -
State: closed - Opened by nkkarpov about 1 year ago
- 3 comments
#521 - feat: Reverse qgrams iterator
Pull Request -
State: open - Opened by RagnarGrootKoerkamp about 1 year ago
- 2 comments
#520 - Current status, plans and support
Issue -
State: closed - Opened by SKY-ALIN about 1 year ago
- 2 comments
#519 - New paper
Issue -
State: open - Opened by smortezah about 1 year ago
#518 - keywords and categories are missing on cargo.toml
Issue -
State: open - Opened by anilbey over 1 year ago
Labels: enhancement
#517 - feat: add `pub use bio_types` to lib.rs
Pull Request -
State: closed - Opened by corneliusroemer over 1 year ago
- 1 comment
#516 - `pub use bio-types` wherever they are used to avoid dependency hell
Issue -
State: closed - Opened by corneliusroemer over 1 year ago
- 2 comments
#515 - fix: edge cases on partial order alignment
Pull Request -
State: closed - Opened by lorewar2 over 1 year ago
- 1 comment
#514 - chore: release 1.1.1
Pull Request -
State: closed - Opened by github-actions[bot] over 1 year ago
Labels: autorelease: pending
#513 - docs: Fix broken BWT links
Pull Request -
State: closed - Opened by iceghost over 1 year ago
- 1 comment
#512 - chore: update CI badge
Pull Request -
State: closed - Opened by dcroote over 1 year ago
- 1 comment
#511 - chore: apply fmt and minor clippy lints
Pull Request -
State: closed - Opened by dcroote over 1 year ago
- 1 comment
#510 - perf: mark dna::complement as inline
Pull Request -
State: closed - Opened by kloetzl over 1 year ago
- 5 comments
#509 - chore: release 1.1.0
Pull Request -
State: closed - Opened by github-actions[bot] over 1 year ago
- 1 comment
Labels: autorelease: tagged
#509 - chore: release 1.1.0
Pull Request -
State: closed - Opened by github-actions[bot] over 1 year ago
- 1 comment
Labels: autorelease: tagged
#508 - Wrap sequence in output file
Issue -
State: open - Opened by alvanuffelen over 1 year ago
- 1 comment
#507 - docs: Documenting expand kmer
Pull Request -
State: open - Opened by Ptipiak over 1 year ago
#507 - docs: Documenting expand kmer
Pull Request -
State: open - Opened by Ptipiak over 1 year ago
#506 - docs: Changing old deprecated crates to maintained one
Pull Request -
State: closed - Opened by Ptipiak over 1 year ago
- 4 comments
#506 - docs: Changing old deprecated crates to maintained one
Pull Request -
State: closed - Opened by Ptipiak over 1 year ago
- 4 comments
#505 - feat: add standard derives to all public types
Pull Request -
State: closed - Opened by TheLostLambda over 1 year ago
- 7 comments
#505 - feat: add standard derives to all public types
Pull Request -
State: closed - Opened by TheLostLambda over 1 year ago
- 7 comments
#504 - chore: release 1.0.0
Pull Request -
State: closed - Opened by github-actions[bot] almost 2 years ago
- 1 comment
Labels: autorelease: tagged
#504 - chore: release 1.0.0
Pull Request -
State: closed - Opened by github-actions[bot] almost 2 years ago
- 1 comment
Labels: autorelease: tagged
#503 - fix!: update to latest ordered-float
Pull Request -
State: closed - Opened by johanneskoester almost 2 years ago
- 1 comment
#503 - fix!: update to latest ordered-float
Pull Request -
State: closed - Opened by johanneskoester almost 2 years ago
- 1 comment
#502 - chore: release 0.43.0
Pull Request -
State: closed - Opened by github-actions[bot] almost 2 years ago
Labels: autorelease: pending
#502 - chore: release 0.43.0
Pull Request -
State: closed - Opened by github-actions[bot] almost 2 years ago
Labels: autorelease: pending
#501 - feat: detect nested ORFs
Pull Request -
State: closed - Opened by TheLostLambda almost 2 years ago
- 3 comments
#500 - chore: release 0.42.0
Pull Request -
State: closed - Opened by github-actions[bot] almost 2 years ago
- 1 comment
Labels: autorelease: tagged
#500 - chore: release 0.42.0
Pull Request -
State: closed - Opened by github-actions[bot] almost 2 years ago
- 1 comment
Labels: autorelease: tagged