Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / rust-bio/rust-bio-tools issues and pull requests

#267 - build(deps): update uuid requirement from 0.7 to 1.9

Pull Request - State: open - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#266 - build(deps): update rand requirement from 0.7.3 to 0.8.5

Pull Request - State: open - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#265 - build(deps): update uuid requirement from 0.7 to 1.8

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies

#264 - build(deps): update itertools requirement from 0.9 to 0.12

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#263 - build(deps): update lz-str requirement from 0.1.0 to 0.2.1

Pull Request - State: open - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#262 - build(deps): update derive-new requirement from 0.5 to 0.6

Pull Request - State: open - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#261 - build(deps): update rand_core requirement from 0.5.1 to 0.6.4

Pull Request - State: open - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#260 - chore: release 0.42.2

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago - 1 comment
Labels: autorelease: tagged

#259 - build: Update rust-htslib to 0.46.0 and GSL to 7.0.0 for Linux ARM64 compatibility

Pull Request - State: closed - Opened by martin-g 8 months ago - 9 comments

#258 - chore: Setup dependabot

Pull Request - State: closed - Opened by fxwiegand over 1 year ago

#257 - build: Update xlsxwriter due to compilation error with older version

Pull Request - State: closed - Opened by fxwiegand over 1 year ago - 1 comment

#256 - xlsxwriter v0.3.5 compiling failed

Issue - State: closed - Opened by adrianodemarino over 1 year ago - 7 comments

#255 - chore: release 0.42.1

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: autorelease: tagged

#254 - rbt does not support gzipped file?

Issue - State: open - Opened by sharkLoc almost 2 years ago

#253 - rbt fastq-filter runs forever on empty ids file

Issue - State: open - Opened by Ulthran almost 2 years ago

#252 - fix: consensus reads: correct handling of read orientation

Pull Request - State: closed - Opened by FelixMoelder almost 2 years ago - 1 comment

#251 - chore: release 0.42.0

Pull Request - State: closed - Opened by github-actions[bot] almost 2 years ago - 1 comment
Labels: autorelease: tagged

#250 - feat: consensus reads - move record ids to description field

Pull Request - State: closed - Opened by FelixMoelder almost 2 years ago - 1 comment

#249 - feat: reformat fastq header

Pull Request - State: closed - Opened by FelixMoelder about 2 years ago

#248 - chore: release 0.41.0

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago - 1 comment
Labels: autorelease: tagged

#247 - feat: Remove duplicate marks from consensus records

Pull Request - State: closed - Opened by FelixMoelder over 2 years ago

#246 - chore: release 0.40.0

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago - 1 comment
Labels: autorelease: tagged

#245 - chore: release 0.39.1

Pull Request - State: closed - Opened by github-actions[bot] over 2 years ago - 1 comment
Labels: autorelease: tagged

#244 - fix: vcfsplit BND record ordering

Pull Request - State: closed - Opened by tedil over 2 years ago

#242 - feat: Enable printing FILTER field for vcf-to-txt

Pull Request - State: closed - Opened by essut over 2 years ago

#241 - fix: Handle empty sequences for bam-anonymize

Pull Request - State: closed - Opened by FelixMoelder over 2 years ago

#240 - bam-anonymize may require soft clipping for supplementary alignments

Issue - State: closed - Opened by jelber2 over 2 years ago - 3 comments

#239 - chore: release 0.39.0

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago - 1 comment
Labels: autorelease: tagged

#238 - feat: Make annotation header available for customized reports

Pull Request - State: closed - Opened by fxwiegand almost 3 years ago
Labels: enhancement

#237 - chore: release 0.38.3

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago - 1 comment
Labels: autorelease: tagged

#236 - fix: Fix vcf-report allele frequency heatmap width

Pull Request - State: closed - Opened by fxwiegand almost 3 years ago
Labels: bug

#235 - fix: Fix vcf-report read plot height when using --max-read-depth

Pull Request - State: closed - Opened by fxwiegand almost 3 years ago
Labels: bug

#234 - chore: release 0.38.2

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago - 1 comment
Labels: autorelease: tagged

#233 - fix: add popper in csv report

Pull Request - State: closed - Opened by thomasbtf almost 3 years ago

#232 - chore: release 0.38.1

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago - 1 comment
Labels: autorelease: tagged

#231 - fix: Report 1-based position in vcf-report log messages

Pull Request - State: closed - Opened by fxwiegand almost 3 years ago - 1 comment

#230 - [vcf-report] 0-based position reporting for 1-based VCF file

Issue - State: closed - Opened by hassanfa almost 3 years ago - 4 comments

#229 - vcf-split breaks sorting

Issue - State: closed - Opened by fgvieira almost 3 years ago - 2 comments

#228 - chore: release 0.38.0

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago - 1 comment
Labels: autorelease: tagged

#227 - fix: Apply latest clippy lints

Pull Request - State: closed - Opened by fxwiegand almost 3 years ago
Labels: clippy

#226 - feat: Add aux field to tooltip

Pull Request - State: closed - Opened by fxwiegand almost 3 years ago

#225 - chore: release 0.37.0

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago - 1 comment
Labels: autorelease: tagged

#224 - feat: Use Feature before HGVSg for vcf-report level 1 naming

Pull Request - State: closed - Opened by fxwiegand almost 3 years ago

#223 - chore: release 0.36.0

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago - 1 comment
Labels: autorelease: tagged

#222 - chore: release 0.35.1

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago
Labels: autorelease: pending

#221 - fix: Fix possible broken link to third stage of vcf-report

Pull Request - State: closed - Opened by fxwiegand almost 3 years ago

#220 - feat: Warn instead of panic for missing HGVSg values in vcf-report

Pull Request - State: closed - Opened by fxwiegand almost 3 years ago

#219 - feat: anonymize bam - adapt mandatory and aux fields

Pull Request - State: closed - Opened by FelixMoelder almost 3 years ago - 1 comment

#218 - chore: release 0.35.0

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago - 1 comment
Labels: autorelease: tagged

#217 - chore: release 0.33.2

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago - 1 comment
Labels: autorelease: pending

#216 - chore: release 0.33.2

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago
Labels: autorelease: pending

#215 - fix: vcf-report tests

Pull Request - State: closed - Opened by FelixMoelder almost 3 years ago - 3 comments

#214 - fix: vcf-report tests

Pull Request - State: closed - Opened by FelixMoelder almost 3 years ago

#213 - chore: release 0.33.2

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago
Labels: autorelease: pending

#212 - fix: add missing js-file to vcf-report

Pull Request - State: closed - Opened by FelixMoelder almost 3 years ago

#211 - feat: Add --annotation-field option to vcf-report

Pull Request - State: closed - Opened by fxwiegand almost 3 years ago
Labels: enhancement

#210 - chore: release 0.34.0

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago - 1 comment
Labels: autorelease: tagged

#209 - feat: Improve gene search for vcf-report

Pull Request - State: closed - Opened by fxwiegand almost 3 years ago

#208 - chore: release 0.33.0

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago - 1 comment
Labels: autorelease: tagged

#207 - feat: Updates and fixes for vcf-report

Pull Request - State: closed - Opened by fxwiegand almost 3 years ago

#206 - fix: Add error messages for missing annotations

Pull Request - State: closed - Opened by fxwiegand almost 3 years ago

#204 - docs: Add `gsl` dependency in README

Pull Request - State: closed - Opened by RagnarGrootKoerkamp almost 3 years ago - 1 comment

#203 - chore: release 0.32.0

Pull Request - State: closed - Opened by github-actions[bot] almost 3 years ago - 1 comment
Labels: autorelease: tagged

#202 - feat: Update rust-bio

Pull Request - State: closed - Opened by FelixMoelder almost 3 years ago

#201 - Compile error when depending on `rust-bio` HEAD/master

Issue - State: closed - Opened by RagnarGrootKoerkamp almost 3 years ago - 7 comments

#200 - feat: Add UPGMA, Neighbor-Joining, and RF-distance to cli tool

Pull Request - State: closed - Opened by RagnarGrootKoerkamp almost 3 years ago - 4 comments

#199 - fix: Fix read processing when building consensus reads

Pull Request - State: closed - Opened by FelixMoelder about 3 years ago

#198 - chore: release 0.31.0

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago - 1 comment
Labels: autorelease: tagged

#197 - fix: Disconnect neighboring insertion markers

Pull Request - State: closed - Opened by fxwiegand about 3 years ago

#196 - feat: Show position of reference base in tooltip

Pull Request - State: closed - Opened by fxwiegand about 3 years ago

#195 - chore: release 0.30.2

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago - 1 comment
Labels: autorelease: tagged

#193 - General grammar for even more flexible csv-reports

Issue - State: closed - Opened by johanneskoester about 3 years ago - 1 comment

#192 - Multiple file support for csv-report

Issue - State: closed - Opened by fxwiegand about 3 years ago - 1 comment
Labels: enhancement

#191 - fix: various fixes for consensus calling

Pull Request - State: closed - Opened by FelixMoelder about 3 years ago - 1 comment

#190 - chore: release 0.30.1

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago - 1 comment
Labels: autorelease: tagged

#189 - fix: Refine MAPQ color scheme and scale type

Pull Request - State: closed - Opened by fxwiegand about 3 years ago

#188 - chore: release 0.30.0

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago - 1 comment
Labels: autorelease: tagged

#187 - feat: Various read plot updates for vcf-report and plot-bam

Pull Request - State: closed - Opened by fxwiegand about 3 years ago
Labels: enhancement

#186 - Various read plot updates for vcf-report and plot-bam

Issue - State: closed - Opened by fxwiegand about 3 years ago
Labels: enhancement

#185 - fix: fix DI tag when building consensus reads

Pull Request - State: closed - Opened by FelixMoelder about 3 years ago

#184 - chore: release 0.29.0

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago - 1 comment
Labels: autorelease: tagged

#183 - chore: release 0.28.0

Pull Request - State: closed - Opened by github-actions[bot] about 3 years ago - 1 comment
Labels: autorelease: tagged

#182 - feat: Revise third stage of vcf-report

Pull Request - State: closed - Opened by fxwiegand about 3 years ago

#181 - feat: simulate reads from real bam files

Pull Request - State: closed - Opened by FelixMoelder about 3 years ago

#180 - chore: release 0.27.0

Pull Request - State: closed - Opened by github-actions[bot] over 3 years ago - 1 comment
Labels: autorelease: tagged

#179 - feat: increase base quality scale

Pull Request - State: closed - Opened by FelixMoelder over 3 years ago

#178 - fix: remove custom classifications

Pull Request - State: closed - Opened by FelixMoelder over 3 years ago

#177 - fix: improved handling of softclips

Pull Request - State: closed - Opened by FelixMoelder over 3 years ago

#176 - chore: release 0.26.1

Pull Request - State: closed - Opened by github-actions[bot] over 3 years ago - 1 comment
Labels: autorelease: tagged

#175 - fix: Respect target CPU compat via rocksdb ^0.17

Pull Request - State: closed - Opened by mbargull over 3 years ago

#174 - chore: release 0.26.0

Pull Request - State: closed - Opened by github-actions[bot] over 3 years ago - 1 comment
Labels: autorelease: tagged

#173 - feat: Add tooltip for vcf-report bar plots

Pull Request - State: closed - Opened by fxwiegand over 3 years ago
Labels: enhancement

#172 - fix: Cosmic link

Pull Request - State: closed - Opened by FelixMoelder over 3 years ago

#171 - chore: release 0.25.0

Pull Request - State: closed - Opened by github-actions[bot] over 3 years ago - 1 comment
Labels: autorelease: tagged

#170 - feat: Add linkout for COSV entries

Pull Request - State: closed - Opened by FelixMoelder over 3 years ago

#169 - fix: csv-report for empty files

Pull Request - State: closed - Opened by fxwiegand over 3 years ago
Labels: bug

#168 - chore: release 0.24.1

Pull Request - State: closed - Opened by github-actions[bot] over 3 years ago - 1 comment
Labels: autorelease: tagged