ruanjue/smartdenovo issues and pull requests

#62 - Minimum Read Length

Issue - State: open - Opened by afazhra 15 days ago

#61 - cut_biedge_strgraph_core Undefined references

Issue - State: open - Opened by zhizhi411 7 months ago - 1 comment

#60 - The assembly of genome is less than expect

Issue - State: open - Opened by ala98412 about 1 year ago

#59 - smartdenovo make error

Issue - State: open - Opened by Bearmax90 about 2 years ago - 5 comments

#58 - make: *** [JBX.dmo.lay] Error 1

Issue - State: open - Opened by zxgsy520 about 2 years ago - 1 comment

#57 - make: *** [pwk_genome.mak:27: pwk_genome.dmo.cns] Error 137

Issue - State: open - Opened by dzh0220 about 2 years ago - 4 comments

#56 - The tool returned zero bytes of wtasm.dmo.cns.log, wtasm.dmo.cns, and wtasm.dmo.lay.utg

Issue - State: open - Opened by ChooseelBunsuwansakul over 2 years ago - 1 comment

#55 - Assembly summary

Issue - State: open - Opened by LisSa13 over 2 years ago

#54 - Slurm exit code 2

Issue - State: closed - Opened by dagi34 over 2 years ago - 3 comments

#53 - Does smartdenovo apply to PacBio HiFi Reads?

Issue - State: closed - Opened by ZhangXuegrowup almost 3 years ago - 2 comments

#52 - Does it support multiple input files like input*.fa ?

Issue - State: open - Opened by Ural-Yunusbaev almost 3 years ago - 1 comment

#51 - Resume

Issue - State: open - Opened by ardy20 over 3 years ago - 1 comment

#50 - .gfa file produced

Issue - State: open - Opened by ardy20 over 3 years ago - 1 comment

#49 - so looong!!

Issue - State: open - Opened by julieaorjuela over 3 years ago - 1 comment

#48 - how to adjusting parameters to improve the assembly result

Issue - State: open - Opened by linshengnan2020 almost 4 years ago - 3 comments

#47 - Assembly versus genome size

Issue - State: closed - Opened by ChuShin about 4 years ago - 2 comments

#46 - prefix.dmo.lay.utg and contig.fasta

Issue - State: open - Opened by pengbo233 over 4 years ago - 5 comments

#45 - aarch64 platform support

Issue - State: open - Opened by darmac over 4 years ago

#44 - Nanopore sequence commands

Issue - State: closed - Opened by bioramg over 4 years ago - 5 comments

#43 - Does it support fa.gz as the input?

Issue - State: open - Opened by X-WJ about 5 years ago - 4 comments

#42 - Died at ./smartdenovo-master/smartdenovo.pl line 23.

Issue - State: open - Opened by baizixiansheng about 5 years ago - 6 comments

#41 - About meaning of -c parameter

Issue - State: closed - Opened by hungweichen0327 about 5 years ago - 2 comments

#40 - why is wtgbo skipped when using dmo overlapper in smartdenovo.pl?

Issue - State: closed - Opened by zhangrengang about 5 years ago - 1 comment

#39 - the output file is null

Issue - State: closed - Opened by wuxiaopei0509 about 5 years ago - 1 comment

#38 - error while running smartdenovo

Issue - State: closed - Opened by tanu121093 about 5 years ago - 3 comments

#37 - polishing Smartdenovo assembly

Issue - State: closed - Opened by biowackysci over 5 years ago - 1 comment

#36 - Discrepancies genome size

Issue - State: closed - Opened by begsch over 5 years ago - 4 comments

#35 - installation error

Issue - State: open - Opened by madhubioinfo over 5 years ago - 7 comments

#34 - Should nanopores reads be corrected by canu or other corrector before using smartdenovo

Issue - State: closed - Opened by ncgrjsmiao over 5 years ago - 1 comment

#33 - How to run wtzmo parallelly

Issue - State: closed - Opened by Jolvii85 over 5 years ago - 3 comments

#32 - failed to `make wtcorr `

Issue - State: closed - Opened by zhangrengang over 5 years ago - 1 comment

#31 - dmo.lay.

Issue - State: closed - Opened by Lutri22 over 5 years ago - 1 comment

#30 - It would be good to have an actual release of this.

Issue - State: closed - Opened by akesandgren over 5 years ago - 2 comments

#29 - PacBio and Nanopore Hybrid Assembly

Issue - State: closed - Opened by biowackysci over 5 years ago

#28 - wtpoa-cns bam correction stage segmentation fault

Issue - State: closed - Opened by yuwwu almost 6 years ago - 1 comment

#27 - separating similar chromosome parts in corrected read assemblies

Issue - State: closed - Opened by chklopp almost 6 years ago - 1 comment

#26 - How does a SMARTdenovo output file look like

Issue - State: closed - Opened by biowackysci almost 6 years ago - 2 comments

#25 - wtzmo中的参数

Issue - State: closed - Opened by AmicPair about 6 years ago - 1 comment

#24 - chloroplast genome totally lost

Issue - State: closed - Opened by njaupan about 6 years ago - 2 comments

#23 - SMARTdenovo failure

Issue - State: closed - Opened by gabster about 6 years ago - 8 comments

#22 - Compiation failed on "undefined reference to `cut_biedge_strgraph2'"

Issue - State: closed - Opened by yoann-dufresne about 6 years ago - 6 comments

#21 - Kmer selection

Issue - State: closed - Opened by njaupan over 6 years ago - 1 comment

#20 - output fastq from wtcns

Issue - State: closed - Opened by njaupan over 6 years ago - 1 comment

#19 - missing one entire chromosome in the final assembly

Issue - State: closed - Opened by yjx1217 over 6 years ago - 4 comments

#18 - smartdenovo make error

Issue - State: closed - Opened by liguiyang410 over 6 years ago - 8 comments

#17 - Compilation error

Issue - State: closed - Opened by yjx1217 over 6 years ago - 14 comments

#16 - [SMDS849.dmo.ovl] Bus error (core dumped)

Issue - State: closed - Opened by HTaekOppa over 6 years ago - 18 comments

#15 - Performance improvement

Issue - State: closed - Opened by tangerzhang over 6 years ago - 4 comments

#14 - Final Assembly File (*.cns) is not generated

Issue - State: closed - Opened by VivekTodur over 6 years ago - 1 comment

#13 - No .cns file

Issue - State: closed - Opened by HTaekOppa almost 7 years ago - 1 comment

#12 - Generate consensus fasta file with Smartdenovo

Issue - State: closed - Opened by a-velt almost 7 years ago - 3 comments

#11 - Error while trying to run smartdenovo

Issue - State: closed - Opened by caonetto almost 7 years ago - 5 comments

#10 - dump core while running wtlay

Issue - State: closed - Opened by chklopp almost 7 years ago - 3 comments

#9 - cns output to fasta format

Issue - State: closed - Opened by bioteksampath almost 7 years ago - 3 comments

#8 - The meaning of each output file

Issue - State: closed - Opened by nottwy about 7 years ago - 4 comments

#7 - Error running SMARTdenovo

Issue - State: closed - Opened by bioteksampath about 7 years ago - 6 comments

GitHub / ruanjue/smartdenovo issues and pull requests