Ecosyste.ms: Issues

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GitHub / rsetienne/DAISIE issues and pull requests

#172 - Develop

Pull Request - State: closed - Opened by rsetienne 1 day ago

#171 - changed all links that were not DOIs to DOIs

Pull Request - State: closed - Opened by Neves-P 1 day ago

#170 - changed all links that were not DOIs to DOIs

Pull Request - State: closed - Opened by luislvalente 3 days ago

#169 - Develop

Pull Request - State: closed - Opened by rsetienne 4 days ago

#168 - Add DAISIE FAQ vignette

Pull Request - State: closed - Opened by Neves-P 7 days ago

#167 - Bug fixes in IW model (brt table)

Pull Request - State: closed - Opened by Neves-P 8 days ago

#166 - F2018

Pull Request - State: closed - Opened by rsetienne 7 months ago

#165 - Non oceanic loglik

Pull Request - State: closed - Opened by rsetienne 7 months ago

#164 - F2018

Pull Request - State: closed - Opened by HHildenbrandt 9 months ago - 1 comment

#163 - Documentation

Pull Request - State: closed - Opened by rsetienne over 1 year ago

#162 - v4.4.1

Pull Request - State: closed - Opened by Neves-P over 1 year ago - 6 comments

#161 - Shift loglikelihood bugfixes

Pull Request - State: closed - Opened by Neves-P over 1 year ago - 1 comment

#160 - Error when relaxed parameter mean or sd is infinite

Pull Request - State: closed - Opened by joshwlambert over 1 year ago - 5 comments

#159 - Relaxed-rate model cannot take Inf K as initial parameter

Issue - State: closed - Opened by joshwlambert over 1 year ago - 5 comments
Labels: bug

#158 - v4.4.0

Pull Request - State: closed - Opened by Neves-P almost 2 years ago - 1 comment

#157 - v4.3.4

Pull Request - State: closed - Opened by Neves-P almost 2 years ago

#156 - Cpp17

Pull Request - State: closed - Opened by Neves-P almost 2 years ago - 1 comment

#155 - v4.3.3

Pull Request - State: closed - Opened by Neves-P almost 2 years ago

#154 - DAISIE 4.3.2

Pull Request - State: closed - Opened by Neves-P almost 2 years ago - 1 comment

#153 - v4.3.1

Pull Request - State: closed - Opened by Neves-P almost 2 years ago - 1 comment

#152 - V4.3.0

Pull Request - State: closed - Opened by xieshu95 about 2 years ago

#151 - Develop

Pull Request - State: closed - Opened by rsetienne about 2 years ago

#150 - Dev ublas

Pull Request - State: closed - Opened by rsetienne about 2 years ago

#149 - Develop

Pull Request - State: closed - Opened by xieshu95 about 2 years ago - 1 comment

#148 - Fix https://github.com/rsetienne/DAISIE/issues/147

Pull Request - State: closed - Opened by Yangshen0325 over 2 years ago - 1 comment
Labels: bug

#146 - master to develop

Pull Request - State: closed - Opened by rsetienne over 2 years ago

#145 - fixed endpars1

Pull Request - State: closed - Opened by joshwlambert over 2 years ago - 2 comments
Labels: bug

#144 - Would it be `seq_len(replicates)` rather than `seq_along(replicates)`

Issue - State: closed - Opened by Yangshen0325 over 2 years ago - 2 comments
Labels: bug

#143 - v4.2.0

Pull Request - State: closed - Opened by Neves-P over 2 years ago - 2 comments

#142 - Ontogeny loglik onto iw abm nonoceanic

Pull Request - State: closed - Opened by Neves-P over 2 years ago

#141 - v4.1.1

Pull Request - State: closed - Opened by Neves-P almost 3 years ago - 1 comment

#140 - v4.1.0

Pull Request - State: closed - Opened by Neves-P almost 3 years ago - 2 comments

#139 - Ontogeny loglik test

Pull Request - State: closed - Opened by Neves-P almost 3 years ago

#138 - v4.0.5

Pull Request - State: closed - Opened by Neves-P about 3 years ago - 1 comment
Labels: High priority

#137 - Conditioning

Pull Request - State: closed - Opened by rsetienne over 3 years ago

#136 - Daisie cs odeint

Pull Request - State: closed - Opened by Neves-P over 3 years ago

#135 - v4.0.2

Pull Request - State: closed - Opened by Neves-P over 3 years ago - 1 comment

#134 - v4.0.1

Pull Request - State: closed - Opened by Neves-P over 3 years ago

#133 - IW B fix

Pull Request - State: closed - Opened by Neves-P over 3 years ago

#132 - Small change to avoid unnecessary warning message

Pull Request - State: closed - Opened by luislvalente over 3 years ago

#131 - Daisie iw b odeint

Pull Request - State: closed - Opened by rsetienne over 3 years ago

#130 - dplyr 1.0.6

Issue - State: open - Opened by romainfrancois almost 4 years ago - 1 comment

#129 - v3.2.1 - Documentation bugfix

Pull Request - State: closed - Opened by Neves-P almost 4 years ago

#128 - GHA on PRs

Pull Request - State: closed - Opened by Neves-P almost 4 years ago

#127 - Identify functions not to be exported

Issue - State: closed - Opened by Neves-P about 4 years ago - 1 comment
Labels: refactor

#126 - Remove legacy functions and related code

Issue - State: closed - Opened by Neves-P about 4 years ago - 1 comment
Labels: refactor

#125 - Rework DAISIE_ONEcolonist()

Issue - State: closed - Opened by Neves-P about 4 years ago - 1 comment

#124 - v3.2.0 release

Pull Request - State: closed - Opened by HHildenbrandt about 4 years ago - 5 comments

#123 - 2 type simulations with conditioning should match MLE

Issue - State: closed - Opened by Neves-P over 4 years ago - 1 comment

#122 - Conditioning on number of colonists on ML and sim - CS model

Pull Request - State: closed - Opened by Neves-P over 4 years ago - 2 comments
Labels: enhancement

#121 - Expand condioning on n_col

Issue - State: closed - Opened by Neves-P over 4 years ago - 2 comments
Labels: Low Priority

#120 - Fix travis - bionic builds

Pull Request - State: closed - Opened by Neves-P over 4 years ago

#119 - Build fails in Bionic due to ape + imagemagick

Issue - State: closed - Opened by Neves-P over 4 years ago - 1 comment
Labels: High priority

#118 - Merge v3.0.1 with master

Pull Request - State: closed - Opened by rsetienne over 4 years ago

#117 - Develop

Pull Request - State: closed - Opened by rsetienne over 4 years ago

#116 - Tidyr install fix

Pull Request - State: closed - Opened by Neves-P over 4 years ago - 2 comments

#115 - Tidyr fix

Pull Request - State: closed - Opened by Neves-P over 4 years ago - 2 comments

#114 - v3.0.0

Pull Request - State: closed - Opened by rsetienne over 4 years ago

#113 - v3.0.0

Pull Request - State: closed - Opened by Neves-P over 4 years ago - 5 comments
Labels: High priority

#112 - Archive package on zenodo

Issue - State: closed - Opened by Neves-P over 4 years ago - 1 comment
Labels: High priority, depends

#111 - Release v3.0.0

Issue - State: closed - Opened by Neves-P over 4 years ago - 1 comment
Labels: High priority

#110 - Suggestion: Warn user when ddep = 0 and K != Inf

Issue - State: open - Opened by Neves-P over 4 years ago
Labels: enhancement, suggestion

#109 - DAISIE_MW_ML not functioning in develop branch

Issue - State: closed - Opened by Neves-P over 4 years ago - 3 comments
Labels: bug, High priority

#108 - Document stac = 0 in some sim functions

Pull Request - State: closed - Opened by Neves-P over 4 years ago - 2 comments

#107 - Empty island should only have 1 element and no stac = 0

Pull Request - State: closed - Opened by Neves-P over 4 years ago - 1 comment
Labels: bug, High priority

#106 - Raph

Pull Request - State: closed - Opened by rscherrer over 4 years ago - 2 comments

#105 - Merge develop back into my branch

Pull Request - State: closed - Opened by luislvalente over 4 years ago - 1 comment

#104 - Luis

Pull Request - State: closed - Opened by luislvalente over 4 years ago - 3 comments

#103 - Multi-k and many other changes

Pull Request - State: closed - Opened by Neves-P over 4 years ago - 1 comment

#102 - Improve style

Issue - State: open - Opened by Neves-P almost 5 years ago

#101 - Check all parameters

Issue - State: open - Opened by Neves-P almost 5 years ago

#100 - Make dedicated error checking funtions

Issue - State: open - Opened by Neves-P almost 5 years ago

#99 - Remove the most evil of operators

Issue - State: open - Opened by Neves-P almost 5 years ago

#98 - Make verbose = FALSE by default

Issue - State: open - Opened by Neves-P almost 5 years ago

#97 - Consider removing plot by default

Issue - State: open - Opened by Neves-P almost 5 years ago

#96 - Consider more evident default parameters

Issue - State: open - Opened by Neves-P almost 5 years ago

#95 - Improve variable naming

Issue - State: open - Opened by Neves-P almost 5 years ago

#94 - Improve examples

Issue - State: open - Opened by Neves-P almost 5 years ago - 2 comments

#93 - Correct blame/praise

Issue - State: open - Opened by Neves-P almost 5 years ago - 1 comment

#92 - Clean up and itemize return elements

Issue - State: open - Opened by Neves-P almost 5 years ago

#91 - Make correct spacing in roxygen2 blocks

Issue - State: open - Opened by Neves-P almost 5 years ago

#90 - Review code

Issue - State: open - Opened by richelbilderbeek almost 5 years ago - 6 comments

#89 - Bug: DAISIE_sim_core_constant_rate returns duplicate lines in sttt

Issue - State: closed - Opened by Neves-P almost 5 years ago - 2 comments
Labels: bug, High priority

#88 - Feature request: Allow full STTs to be plotted

Issue - State: open - Opened by Neves-P almost 5 years ago
Labels: Low Priority

#87 - Tip: use @inheritParams

Issue - State: closed - Opened by richelbilderbeek about 5 years ago - 4 comments

#86 - Revamp format_CS

Issue - State: closed - Opened by Neves-P about 5 years ago - 1 comment

#85 - Codecov always fails

Issue - State: closed - Opened by joshwlambert over 5 years ago - 24 comments

#84 - Feature: add power law on ontogeny cladogenesis

Issue - State: closed - Opened by Neves-P over 5 years ago

#83 - Develop

Pull Request - State: closed - Opened by xieshu95 over 5 years ago - 2 comments

#82 - Feature request: create_daisie_pars1

Issue - State: closed - Opened by richelbilderbeek over 5 years ago - 2 comments

#81 - Write test to crash DAISIE as discussed

Issue - State: closed - Opened by richelbilderbeek over 5 years ago - 4 comments

#80 - Bug: not_present incorrectly calculated in DAISIE_format_IW

Issue - State: closed - Opened by Neves-P over 5 years ago
Labels: bug

#74 - Fix doc

Issue - State: open - Opened by joshwlambert over 5 years ago - 2 comments

#72 - Shu: is using both 'Tpars' and 'single_trait_state' redundant?

Issue - State: closed - Opened by richelbilderbeek over 5 years ago - 2 comments

#69 - DAISIE_utils

Issue - State: closed - Opened by Neves-P over 5 years ago - 1 comment
Labels: refactor

#68 - DAISIE_tutorial

Issue - State: closed - Opened by Neves-P over 5 years ago
Labels: refactor

#67 - DAISIE_sumstats_rates

Issue - State: closed - Opened by Neves-P over 5 years ago
Labels: refactor

#66 - DAISIE_sim_with_mainland

Issue - State: closed - Opened by Neves-P over 5 years ago - 2 comments
Labels: refactor