rrwick/Filtlong issues and pull requests

#39 - fix build failures with gcc 13

Pull Request - State: open - Opened by emollier about 1 year ago

#38 - How to properly cite Filtlong and Porechop tools?

Issue - State: open - Opened by BenAawf over 1 year ago

#37 - Error: incorrect FASTQ format

Issue - State: open - Opened by MrTomRod over 1 year ago

#36 - SequenceFormatException: Midline

Issue - State: open - Opened by awh082834 almost 2 years ago

#35 - Retaining lowest quality reads

Issue - State: open - Opened by najohink about 2 years ago

#34 - Installation

Issue - State: open - Opened by gquabron over 2 years ago

#33 - save kmer hash for re-use?

Issue - State: open - Opened by rwhetten about 3 years ago

#32 - Export per read quality scores

Issue - State: open - Opened by Adamtaranto almost 4 years ago

#31 - Question: Will Filtlong remove invalid/bad reads from ONT FASTQ data?

Issue - State: closed - Opened by cement-head almost 4 years ago - 1 comment

#30 - Error during scoring long reads

Issue - State: closed - Opened by crysclitheroe almost 4 years ago - 3 comments

#29 - Python 3 Compatibility

Issue - State: open - Opened by Adamtaranto almost 4 years ago

#28 - duplicate read name

Issue - State: closed - Opened by husamia about 4 years ago - 1 comment

#27 - add argument max_length

Pull Request - State: closed - Opened by pmenzel about 4 years ago

#26 - Split and trim very slow

Issue - State: open - Opened by lab-rat-kid over 4 years ago

#25 - add support for multiple input files

Pull Request - State: open - Opened by tolot27 over 4 years ago

#24 - the output of read_info_histograms.sh is not right.

Issue - State: open - Opened by limin321 over 4 years ago - 1 comment

#23 - read_info_histograms.sh not working

Issue - State: closed - Opened by limin321 almost 5 years ago - 9 comments

#22 - Filter short reads

Issue - State: closed - Opened by iowa69 almost 5 years ago - 2 comments

#21 - citation

Issue - State: closed - Opened by BioRB almost 5 years ago - 3 comments

#20 - Filtering parameters

Issue - State: closed - Opened by shimbalama almost 5 years ago - 1 comment

#19 - filt the pacbio reads of pooled genomes

Issue - State: open - Opened by Tonny-zhou almost 5 years ago

#18 - --min_mean_q not working

Issue - State: closed - Opened by dcopetti about 5 years ago - 2 comments

#17 - Illumina data - coverage cap

Issue - State: open - Opened by fbemm over 5 years ago

#16 - read_info_histogram.sh not running on my data

Issue - State: open - Opened by limin321 over 5 years ago - 4 comments

#15 - Several issues in test suite

Issue - State: open - Opened by tillea over 5 years ago - 5 comments

#14 - q-score filtering not working

Issue - State: open - Opened by sovp almost 6 years ago - 1 comment

#13 - Enable custom kmer size

Issue - State: closed - Opened by SorenKarst almost 6 years ago - 2 comments

#12 - maximum read length

Issue - State: closed - Opened by sarah872 about 6 years ago - 1 comment

#11 - Filtlong summary stats to file

Issue - State: closed - Opened by rbutleriii about 6 years ago - 1 comment

#10 - citing Filtlong

Issue - State: closed - Opened by supanthee over 6 years ago - 1 comment

#9 - Quality priority

Issue - State: closed - Opened by LaraUrban over 6 years ago - 1 comment

#8 - Newer version of filtlong interprets input as fasta even though it is fastq

Issue - State: closed - Opened by lfaller over 6 years ago - 3 comments

#7 - Documentation "--min_mean_q" should be a % accuracy

Issue - State: closed - Opened by Kirk3gaard over 6 years ago - 1 comment

#6 - no output when using process substitution as input

Issue - State: open - Opened by rec3141 almost 7 years ago - 1 comment
Labels: enhancement

#5 - basic_string::_S_construct null not valid

Issue - State: closed - Opened by rec3141 almost 7 years ago - 2 comments
Labels: enhancement

#4 - Phred to basecalling probability conversion table?

Issue - State: closed - Opened by GeoMicroSoares almost 7 years ago - 1 comment

GitHub / rrwick/Filtlong issues and pull requests