Ecosyste.ms: Issues

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GitHub / rpomponio/neuroHarmonize issues and pull requests

#55 - Apply pre-trained model on a single subject

Issue - State: closed - Opened by giuseppeantoniomotisi 24 days ago - 2 comments
Labels: question

#54 - return NaN matrix

Issue - State: closed - Opened by bluehyena about 1 month ago - 4 comments
Labels: question

#53 - CV Grid Search

Issue - State: closed - Opened by SimBoex 4 months ago

#52 - Problem with harmonised NIFTI images

Issue - State: closed - Opened by gvbhalerao591 4 months ago - 3 comments
Labels: question

#51 - Rounding after applyModelNIFTIs

Issue - State: open - Opened by zyeapp 7 months ago - 1 comment
Labels: question

#50 - Error in harmonizationApply due to site differences between training and testing data

Issue - State: open - Opened by Yuvi-416 8 months ago - 5 comments
Labels: question

#49 - NIFTI output after harmonization

Issue - State: closed - Opened by rahulharikumarr 8 months ago - 6 comments

#48 - can size of train and test set differ?

Issue - State: closed - Opened by hannahhacker 9 months ago - 4 comments

#47 - KeyError: 'grand_mean'

Issue - State: closed - Opened by pesojka 9 months ago - 6 comments

#46 - How to save harmonization model?

Issue - State: closed - Opened by angelw55 9 months ago - 1 comment

#45 - ModuleNotFoundError for version 2.4.1

Issue - State: closed - Opened by bradenyang 10 months ago - 4 comments

#44 - Adding ref_batch parameter from ahzhu's implementation

Pull Request - State: closed - Opened by rpomponio 10 months ago - 1 comment

#43 - fixing issue #35 to allow multiple smooth terms

Pull Request - State: closed - Opened by rpomponio 11 months ago

#42 - Document "orig_model" parameter in harmonizationLearn

Issue - State: open - Opened by olfMombach 11 months ago
Labels: documentation

#41 - Dev issue 04

Pull Request - State: closed - Opened by rpomponio about 1 year ago

#40 - Output nifti preview after harmonizing

Issue - State: closed - Opened by hajerkr about 1 year ago - 2 comments

#39 - Singular matrix harmonizationLearn

Issue - State: closed - Opened by hajerkr over 1 year ago - 4 comments

#38 - Bug in grand mean calculation of one-dimensional data

Issue - State: closed - Opened by friedrichkrohn over 1 year ago - 3 comments

#37 - Cropped images

Issue - State: closed - Opened by SPChytas over 1 year ago - 1 comment

#36 - Providing paths to nifti images, but mask stage fails

Issue - State: closed - Opened by athenahowell over 1 year ago - 2 comments

#35 - More than one variable in smooth_terms

Issue - State: closed - Opened by mblesac almost 2 years ago - 2 comments

#34 - How many subjects per scanner are required?

Issue - State: closed - Opened by Melissa1909 almost 2 years ago - 1 comment

#33 - longitudinal data

Issue - State: closed - Opened by meganhuibregtse almost 2 years ago - 1 comment

#32 - (issue sent as email instead)

Issue - State: closed - Opened by smeisler about 2 years ago

#30 - Pretrained models

Issue - State: closed - Opened by wizofe about 2 years ago - 1 comment

#29 - Add capability to handle categorical covariates

Pull Request - State: open - Opened by melhemr over 2 years ago - 1 comment

#28 - Create deep copy of input model to avoid overwriting input

Pull Request - State: closed - Opened by melhemr over 2 years ago - 2 comments

#27 - Cleanup code + minor bug fixes

Pull Request - State: open - Opened by fraimondo over 2 years ago - 1 comment

#26 - Update n batch

Pull Request - State: closed - Opened by AbdulkadirA over 2 years ago - 1 comment

#25 - Append B_hat parameter for out-of-sample sites

Pull Request - State: closed - Opened by melhemr over 2 years ago

#24 - Fix out of sample design matrix

Pull Request - State: closed - Opened by AbdulkadirA over 2 years ago

#23 - Working with high-resolution NIFTI Images

Issue - State: closed - Opened by WY-SHI over 2 years ago - 1 comment

#22 - Updated docs with new version number

Pull Request - State: closed - Opened by rpomponio over 2 years ago

#21 - Add optional argument "seed"

Pull Request - State: closed - Opened by AbdulkadirA over 2 years ago

#20 - Out of Sample Harmonization using COMBAT in harmonizationLearn

Pull Request - State: closed - Opened by melhemr over 2 years ago

#19 - Results not entirely deterministic

Issue - State: closed - Opened by rpomponio almost 3 years ago

#18 - Add ref_batch parameter to neuroHarmonize to use SITE/scanner as refe…

Pull Request - State: open - Opened by melhemr almost 3 years ago - 1 comment

#17 - Scaling issue

Pull Request - State: closed - Opened by yuhancui almost 3 years ago - 2 comments

#16 - Including Variable of Interest in Covariate Matrix?

Issue - State: closed - Opened by Saqibm128 about 3 years ago - 6 comments

#14 - Update README.rst

Pull Request - State: closed - Opened by vnckppl over 3 years ago

#13 - Modified code for harmonization on subjects (nifti) from new site

Pull Request - State: closed - Opened by yuhancui over 3 years ago - 2 comments

#12 - keep output nifti orientation as input

Pull Request - State: closed - Opened by yuhancui over 3 years ago - 1 comment

#11 - Correct docstring for output s_data

Pull Request - State: closed - Opened by AbdulkadirA over 3 years ago - 1 comment

#10 - Correcting for site as well as the effect of covariates on NIfTI images

Issue - State: closed - Opened by parekhpravesh over 3 years ago - 6 comments

#9 - Update scripts to account for new SITES

Pull Request - State: closed - Opened by melhemr almost 4 years ago - 5 comments

#8 - Add details about the output to the docstring

Pull Request - State: closed - Opened by AbdulkadirA over 4 years ago

#7 - Transpose confound-corrected data matrix before returning it

Pull Request - State: closed - Opened by AbdulkadirA over 4 years ago

#6 - Generate Spatial Maps for NIFTI harmonization

Issue - State: open - Opened by rpomponio over 4 years ago
Labels: enhancement

#5 - Ability to specify reference site

Issue - State: closed - Opened by rpomponio over 4 years ago

#4 - Error when harmonizing only one measure

Issue - State: closed - Opened by rpomponio over 4 years ago

#3 - "aprior not defined"

Issue - State: closed - Opened by rpomponio almost 5 years ago

#2 - Harmonization Fails with One Feature

Issue - State: closed - Opened by rpomponio almost 5 years ago

#1 - Why data matrix should be N_samples x N_features

Issue - State: closed - Opened by anlijuncn about 5 years ago - 2 comments