Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / royerlab/cytoself issues and pull requests

#38 - Cl fig s6

Pull Request - State: open - Opened by chad-liu-cz 4 months ago

#37 - Setup of full .npy dataset?

Issue - State: closed - Opened by amulyagarimella 8 months ago - 2 comments

#36 - Labels that don't match up with available images

Issue - State: closed - Opened by amulyagarimella 9 months ago - 3 comments

#35 - added known issues in README.md

Pull Request - State: closed - Opened by li-li-github 11 months ago - 1 comment

#34 - fixed a bug in README.md

Pull Request - State: closed - Opened by li-li-github 11 months ago - 1 comment

#33 - Pickling error running CytoselfFullTrainer

Issue - State: open - Opened by sheryllin111 11 months ago - 2 comments

#32 - PicklingError: Can't pickle <function DataManagerOpenCell.<lambda>

Issue - State: open - Opened by gitclipp 11 months ago - 3 comments

#31 - Reset early stop counting

Pull Request - State: closed - Opened by li-li-github 12 months ago - 1 comment

#30 - Suggest setting the exact package version for torch in requirements.txt

Issue - State: closed - Opened by jmhb0 12 months ago - 2 comments

#29 - Early stopping does not count consecutive steps on pytorch branch

Issue - State: closed - Opened by jmhb0 12 months ago - 2 comments

#28 - Packages missing + embedding_dim is required for vq_args

Issue - State: closed - Opened by sheryllin111 about 1 year ago - 1 comment

#27 - UMap not looking good

Issue - State: closed - Opened by sofroniewn about 1 year ago - 14 comments

#26 - ModuleNotFoundError: No module named 'cytoself.datamanager'

Issue - State: open - Opened by dedy1179 about 1 year ago - 1 comment

#25 - Release trained model weights

Issue - State: closed - Opened by sofroniewn over 1 year ago - 1 comment

#24 - Variance normalization

Issue - State: closed - Opened by sofroniewn over 1 year ago - 4 comments

#23 - Dataloader for full dataset

Issue - State: closed - Opened by sofroniewn over 1 year ago - 7 comments

#22 - Updated development requirements and pre-commit

Pull Request - State: closed - Opened by li-li-github over 1 year ago - 1 comment

#21 - Nuclear segmentation mask for the original resolution images

Issue - State: open - Opened by xinyiz98 over 1 year ago - 1 comment

#20 - Fixed several bugs in models & trainers

Pull Request - State: closed - Opened by li-li-github over 1 year ago - 1 comment
Labels: bug

#19 - The difference between tensorflow and pytorch version

Issue - State: closed - Opened by exogeny over 1 year ago - 2 comments

#18 - Bump protobuf from 3.20 to 3.20.2 in /requirements

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#17 - train!

Issue - State: closed - Opened by Kaitai-Han over 1 year ago - 2 comments

#16 - Loss weights for optimal training

Issue - State: open - Opened by parthnatekar over 1 year ago - 1 comment

#15 - fixed python3.9 installation in simple_example.ipynb

Pull Request - State: closed - Opened by li-li-github over 1 year ago

#14 - Fixlink

Pull Request - State: closed - Opened by li-li-github over 1 year ago
Labels: bug

#13 - Added Jupyter notebook

Pull Request - State: closed - Opened by li-li-github over 1 year ago
Labels: enhancement

#12 - Google drive links inaccessible/invalid for examples/simple_example

Issue - State: closed - Opened by winch-jm over 1 year ago - 2 comments

#11 - failure to run plot_clustermaps()

Issue - State: open - Opened by bkang-mit over 1 year ago - 1 comment

#10 - added examples for plotting feature spectrum

Pull Request - State: closed - Opened by li-li-github over 1 year ago

#9 - modified doc string

Pull Request - State: closed - Opened by li-li-github over 1 year ago

#8 - Is there any initial file of the manual selected spectrum index?

Issue - State: open - Opened by TerminatorJ almost 2 years ago - 1 comment

#7 - How to normalize the nuclear distance channel?

Issue - State: closed - Opened by JimmyCai91 almost 2 years ago - 5 comments

#6 - Code about Nucleus Segmentation

Issue - State: closed - Opened by Yuangaga almost 2 years ago - 2 comments

#5 - Installation

Issue - State: closed - Opened by JacobNeumann88 almost 2 years ago - 5 comments

#4 - best model wont rollback

Pull Request - State: closed - Opened by li-li-github almost 2 years ago
Labels: bug

#3 - Readme update

Pull Request - State: closed - Opened by li-li-github about 2 years ago
Labels: documentation

#2 - Added Data availability

Pull Request - State: closed - Opened by li-li-github over 2 years ago

#1 - Upgrade gdown version

Pull Request - State: closed - Opened by li-li-github over 2 years ago
Labels: bug