Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / rothamsted/knetbuilder issues and pull requests
#75 - Bump org.apache.xmlgraphics:batik-bridge from 1.7 to 1.17 in /ondex-desktop/ovtk2
Pull Request -
State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies
#74 - Bump org.apache.xmlgraphics:batik-transcoder from 1.7 to 1.17 in /ondex-desktop/ovtk2
Pull Request -
State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies
#73 - Tabular parser sets concept name preferred flag to false
Issue -
State: closed - Opened by KeywanHP about 2 years ago
Labels: bug
#72 - Bump hazelcast from 5.1 to 5.1.3 in /ondex-opt/core-opt/memory-dist
Pull Request -
State: closed - Opened by dependabot[bot] about 2 years ago
- 3 comments
Labels: dependencies
#72 - Bump hazelcast from 5.1 to 5.1.3 in /ondex-opt/core-opt/memory-dist
Pull Request -
State: closed - Opened by dependabot[bot] about 2 years ago
- 3 comments
Labels: dependencies
#71 - GAF parser review and enhancement
Issue -
State: open - Opened by KeywanHP over 2 years ago
Labels: enhancement
#71 - GAF parser review and enhancement
Issue -
State: open - Opened by KeywanHP over 2 years ago
Labels: enhancement
#70 - Cytoscape/JSON exporter, abbreviated concept names clash with colour highlights
Issue -
State: closed - Opened by marco-brandizi over 2 years ago
- 1 comment
Labels: resolution:invalid
#70 - Cytoscape/JSON exporter, abbreviated concept names clash with colour highlights
Issue -
State: closed - Opened by marco-brandizi over 2 years ago
- 1 comment
Labels: resolution:invalid
#69 - Bump jsoup from 1.14.2 to 1.15.3
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 2 comments
Labels: dependencies
#68 - Bump plexus-utils from 1.1 to 3.0.16 in /ondex-knet-builder/ondex-mini
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 2 comments
Labels: dependencies
#68 - Bump plexus-utils from 1.1 to 3.0.16 in /ondex-knet-builder/ondex-mini
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 2 comments
Labels: dependencies
#67 - Bump fop from 0.95 to 2.2 in /ondex-desktop/ovtk2
Pull Request -
State: open - Opened by dependabot[bot] over 2 years ago
- 2 comments
Labels: dependencies
#66 - CytoscapeJS plugin, add option to export pure-JSON
Issue -
State: closed - Opened by marco-brandizi over 2 years ago
- 3 comments
Labels: new feature
#66 - CytoscapeJS plugin, add option to export pure-JSON
Issue -
State: closed - Opened by marco-brandizi over 2 years ago
- 3 comments
Labels: new feature
#65 - Extend tmbased plugin with words to exclude from search
Issue -
State: closed - Opened by KeywanHP over 2 years ago
- 6 comments
Labels: enhancement
#65 - Extend tmbased plugin with words to exclude from search
Issue -
State: closed - Opened by KeywanHP over 2 years ago
- 6 comments
Labels: enhancement
#64 - Migration to Java 17
Issue -
State: open - Opened by marco-brandizi over 2 years ago
- 3 comments
Labels: chore
#64 - Migration to Java 17
Issue -
State: open - Opened by marco-brandizi over 2 years ago
- 3 comments
Labels: chore
#63 - Migrate to Log4j 2 using the 1/2 bridge.
Issue -
State: open - Opened by marco-brandizi almost 3 years ago
Labels: chore
#63 - Migrate to Log4j 2 using the 1/2 bridge.
Issue -
State: open - Opened by marco-brandizi almost 3 years ago
Labels: chore
#62 - Remove dependabot warnings about Apache Axis
Issue -
State: closed - Opened by marco-brandizi almost 3 years ago
- 1 comment
Labels: chore
#61 - Labels in the CytoscapeJS plug-in should be the same used in the rest of KnetMiner
Issue -
State: closed - Opened by marco-brandizi almost 3 years ago
Labels: enhancement
#61 - Labels in the CytoscapeJS plug-in should be the same used in the rest of KnetMiner
Issue -
State: closed - Opened by marco-brandizi almost 3 years ago
Labels: enhancement
#60 - Bump xstream from 1.4.18 to 1.4.19
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
- 2 comments
Labels: dependencies
#60 - Bump xstream from 1.4.18 to 1.4.19
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
- 2 comments
Labels: dependencies
#59 - Bump commons-beanutils from 1.9.3 to 1.9.4 in /ondex-knet-builder/modules/rdf2oxl
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
- 2 comments
Labels: dependencies
#59 - Bump commons-beanutils from 1.9.3 to 1.9.4 in /ondex-knet-builder/modules/rdf2oxl
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
- 2 comments
Labels: dependencies
#58 - Bump hazelcast from 2.3.1 to 4.0.5 in /ondex-opt/core-opt/memory-dist
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
- 1 comment
Labels: dependencies
#58 - Bump hazelcast from 2.3.1 to 4.0.5 in /ondex-opt/core-opt/memory-dist
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
- 1 comment
Labels: dependencies
#57 - Bump mysql-connector-java from 5.1.6 to 8.0.16 in /ondex-opt/core-opt/sql
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
- 1 comment
Labels: dependencies
#57 - Bump mysql-connector-java from 5.1.6 to 8.0.16 in /ondex-opt/core-opt/sql
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
- 1 comment
Labels: dependencies
#56 - Bump xercesImpl from 2.12.1 to 2.12.2
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
- 2 comments
Labels: dependencies
#56 - Bump xercesImpl from 2.12.1 to 2.12.2
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
- 2 comments
Labels: dependencies
#55 - Specification for an offline Graph Traverser and Semantic Motif Initialiser
Issue -
State: closed - Opened by marco-brandizi about 3 years ago
- 9 comments
Labels: new feature
#54 - how can I acquire the specific dataset (e.g rice) of KnetMiner ？
Issue -
State: closed - Opened by Cyviva about 3 years ago
- 3 comments
#54 - how can I acquire the specific dataset (e.g rice) of KnetMiner ？
Issue -
State: closed - Opened by Cyviva about 3 years ago
- 3 comments
#53 - LuceneEnv, concept/relation queries that fetch internal metadata too
Issue -
State: closed - Opened by marco-brandizi about 3 years ago
- 2 comments
Labels: bug
#53 - LuceneEnv, concept/relation queries that fetch internal metadata too
Issue -
State: closed - Opened by marco-brandizi about 3 years ago
- 2 comments
Labels: bug
#52 - Bump lucene-core from 6.6.0 to 7.1.0
Pull Request -
State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies
#51 - Error: org/apache/log4j/PropertyConfigurator
Issue -
State: closed - Opened by ArpitGaurTools over 3 years ago
- 4 comments
Labels: resolution:cant-reproduce
#51 - Error: org/apache/log4j/PropertyConfigurator
Issue -
State: closed - Opened by ArpitGaurTools over 3 years ago
- 4 comments
Labels: resolution:cant-reproduce
#50 - The tab parser seems to have collapsed concepts that have not identical accessions
Issue -
State: closed - Opened by marco-brandizi over 3 years ago
- 3 comments
#50 - The tab parser seems to have collapsed concepts that have not identical accessions
Issue -
State: closed - Opened by marco-brandizi over 3 years ago
- 3 comments
#49 - Bump xstream from 1.4.17 to 1.4.18
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 2 comments
Labels: dependencies
#49 - Bump xstream from 1.4.17 to 1.4.18
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 2 comments
Labels: dependencies
#48 - Bump jsoup from 1.8.3 to 1.14.2
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 2 comments
Labels: dependencies
#48 - Bump jsoup from 1.8.3 to 1.14.2
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 2 comments
Labels: dependencies
#47 - The Text Mining plug-in doesn't find unix4j anymore (was: PubMed efetch parsing problem?)
Issue -
State: closed - Opened by jparsons2222 over 3 years ago
- 1 comment
Labels: bug
#47 - The Text Mining plug-in doesn't find unix4j anymore (was: PubMed efetch parsing problem?)
Issue -
State: closed - Opened by jparsons2222 over 3 years ago
- 1 comment
Labels: bug
#46 - Bump guava from 28.1-jre to 29.0-jre
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 1 comment
Labels: dependencies
#46 - Bump guava from 28.1-jre to 29.0-jre
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 1 comment
Labels: dependencies
#45 - Biocyc parser exception with aracyc biopax-level2.owl
Issue -
State: closed - Opened by KeywanHP almost 4 years ago
- 3 comments
Labels: bug, question
#45 - Biocyc parser exception with aracyc biopax-level2.owl
Issue -
State: closed - Opened by KeywanHP almost 4 years ago
- 3 comments
Labels: bug, question
#44 - Bump xstream from 1.4.16 to 1.4.17
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
- 1 comment
Labels: dependencies
#44 - Bump xstream from 1.4.16 to 1.4.17
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
- 1 comment
Labels: dependencies
#43 - Bump commons-io from 2.5 to 2.7
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
- 1 comment
Labels: dependencies
#43 - Bump commons-io from 2.5 to 2.7
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
- 1 comment
Labels: dependencies
#42 - NullPointerException when searching for a particular set of terms
Issue -
State: closed - Opened by marco-brandizi almost 4 years ago
- 1 comment
Labels: resolution:invalid
#42 - NullPointerException when searching for a particular set of terms
Issue -
State: closed - Opened by marco-brandizi almost 4 years ago
- 1 comment
Labels: resolution:invalid
#41 - Parsing co_321.owl throws an error
Issue -
State: closed - Opened by KeywanHP almost 4 years ago
- 5 comments
Labels: bug
#41 - Parsing co_321.owl throws an error
Issue -
State: closed - Opened by KeywanHP almost 4 years ago
- 5 comments
Labels: bug
#40 - Bump lucene.version from 6.6.0 to 8.8.1
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
- 1 comment
Labels: dependencies
#40 - Bump lucene.version from 6.6.0 to 8.8.1
Pull Request -
State: closed - Opened by dependabot[bot] almost 4 years ago
- 1 comment
Labels: dependencies
#39 - Bump xstream from 1.4.11.1 to 1.4.15
Pull Request -
State: closed - Opened by dependabot[bot] about 4 years ago
- 1 comment
Labels: dependencies
#39 - Bump xstream from 1.4.11.1 to 1.4.15
Pull Request -
State: closed - Opened by dependabot[bot] about 4 years ago
- 1 comment
Labels: dependencies
#38 - Bump xstream from 1.4.11.1 to 1.4.13-java7
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 1 comment
Labels: dependencies
#38 - Bump xstream from 1.4.11.1 to 1.4.13-java7
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 1 comment
Labels: dependencies
#37 - Bump xercesImpl from 2.11.0 to 2.12.0
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 1 comment
Labels: dependencies
#37 - Bump xercesImpl from 2.11.0 to 2.12.0
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 1 comment
Labels: dependencies
#36 - Use of semanticmotifs?
Issue -
State: closed - Opened by man4ish over 4 years ago
- 1 comment
#36 - Use of semanticmotifs?
Issue -
State: closed - Opened by man4ish over 4 years ago
- 1 comment
#35 - Issues with custom data
Issue -
State: closed - Opened by man4ish over 4 years ago
- 9 comments
#35 - Issues with custom data
Issue -
State: closed - Opened by man4ish over 4 years ago
- 9 comments
#34 - Tutorial doesn't work with the latest master version (based on Java 11)
Issue -
State: closed - Opened by marco-brandizi over 4 years ago
- 1 comment
#34 - Tutorial doesn't work with the latest master version (based on Java 11)
Issue -
State: closed - Opened by marco-brandizi over 4 years ago
- 1 comment
#33 - Knetbuilder is working not working for 3.0 while it is working for 1.2
Issue -
State: closed - Opened by man4ish over 4 years ago
- 9 comments
#33 - Knetbuilder is working not working for 3.0 while it is working for 1.2
Issue -
State: closed - Opened by man4ish over 4 years ago
- 9 comments
#32 - Bump junit from 3.8.1 to 4.13.1 in /ondex-desktop/ovtk2-modules/collapserPlugin
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 9 comments
Labels: dependencies
#32 - Bump junit from 3.8.1 to 4.13.1 in /ondex-desktop/ovtk2-modules/collapserPlugin
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 9 comments
Labels: dependencies
#31 - TAB Parser behaviour for blank entries in a column
Issue -
State: closed - Opened by KeywanHP over 4 years ago
- 5 comments
Labels: bug, enhancement
#31 - TAB Parser behaviour for blank entries in a column
Issue -
State: closed - Opened by KeywanHP over 4 years ago
- 5 comments
Labels: bug, enhancement
#30 - Accesion based mapper fails with OutOfMemoryError
Issue -
State: closed - Opened by josephhearnshaw over 4 years ago
- 2 comments
Labels: bug
#30 - Accesion based mapper fails with OutOfMemoryError
Issue -
State: closed - Opened by josephhearnshaw over 4 years ago
- 2 comments
Labels: bug
#29 - Accession based mapper fails with NullPointerException
Issue -
State: closed - Opened by josephhearnshaw over 4 years ago
- 1 comment
Labels: bug
#29 - Accession based mapper fails with NullPointerException
Issue -
State: closed - Opened by josephhearnshaw over 4 years ago
- 1 comment
Labels: bug
#28 - Bump xstream from 1.3.1 to 1.4.10-java7 in /ondex-base/core/marshal
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 1 comment
Labels: dependencies
#28 - Bump xstream from 1.3.1 to 1.4.10-java7 in /ondex-base/core/marshal
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 1 comment
Labels: dependencies
#27 - Bump xercesImpl from 2.9.1 to 2.12.0 in /ondex-base/core/workflow-base
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 1 comment
Labels: dependencies
#27 - Bump xercesImpl from 2.9.1 to 2.12.0 in /ondex-base/core/workflow-base
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 1 comment
Labels: dependencies
#26 - Bump xercesImpl from 2.11.0 to 2.12.0 in /modules/scripting
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 14 comments
Labels: dependencies
#26 - Bump xercesImpl from 2.11.0 to 2.12.0 in /modules/scripting
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 14 comments
Labels: dependencies
#25 - Bump xercesImpl from 2.11.0 to 2.12.0 in /scripting
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 14 comments
Labels: dependencies
#25 - Bump xercesImpl from 2.11.0 to 2.12.0 in /scripting
Pull Request -
State: closed - Opened by dependabot[bot] over 4 years ago
- 14 comments
Labels: dependencies
#24 - Lucene module, search by accession and other issues
Issue -
State: open - Opened by marco-brandizi over 4 years ago
#24 - Lucene module, search by accession and other issues
Issue -
State: open - Opened by marco-brandizi over 4 years ago
#23 - Migration to new Nexus, outdated or no-longer available dependencies
Issue -
State: closed - Opened by marco-brandizi almost 5 years ago
- 1 comment
#23 - Migration to new Nexus, outdated or no-longer available dependencies
Issue -
State: closed - Opened by marco-brandizi almost 5 years ago
- 1 comment
#22 - Only parse UniProt data containing a specific keyword within Publications
Issue -
State: closed - Opened by josephhearnshaw over 5 years ago
- 2 comments
Labels: enhancement
#22 - Only parse UniProt data containing a specific keyword within Publications
Issue -
State: closed - Opened by josephhearnshaw over 5 years ago
- 2 comments
Labels: enhancement