rordenlab/dcm2niix issues and pull requests

#916 - Why is the result of my conversion using dcm2niix macOS version 31MB, but only 9B in WebAssembly?

Issue - State: open - Opened by wwwAngHua 11 days ago - 1 comment

#915 - Reorienting rodent NIFTIs

Issue - State: open - Opened by araikes 15 days ago - 7 comments

#914 - DWI run split into multiple nii files

Issue - State: closed - Opened by yaelanjung 16 days ago - 3 comments

#913 - The phase-encoding direction reported by dcm2niix is different from the MRI protocols in the demo data (Multi-echo Sequences McCausland Center 3T Prisma).

Issue - State: closed - Opened by LarsLu1994 19 days ago - 5 comments

#912 - Improper formatting of %t option in format flag (-f)

Issue - State: closed - Opened by rbonicel 21 days ago - 3 comments

#911 - Philips EPI conversion: TR is incorrect when there is a discrepancy between TR and other temporal measures

Issue - State: closed - Opened by ohinds 27 days ago - 4 comments

#910 - Add wasm jpegls and j2k/htj2k support

Pull Request - State: closed - Opened by hanayik about 1 month ago - 1 comment

#909 - Use bids entities if available in the output name

Issue - State: closed - Opened by marcelzwiers about 1 month ago - 11 comments

#908 - dcm2niixfs.a conflict with existing nifti

Issue - State: closed - Opened by baranaydogan about 1 month ago - 9 comments

#907 - Support for single file mode in libdcm2niixfs.a

Issue - State: open - Opened by baranaydogan about 1 month ago - 3 comments
Labels: enhancement

#906 - Re-add zlib support and enable jpegls support

Pull Request - State: closed - Opened by hanayik about 1 month ago - 1 comment

#905 - Filename question - is there a way to omit echo number?

Issue - State: closed - Opened by elijahrockers about 1 month ago - 2 comments

#904 - Missing PhaseEncodingDirection from ASL JSON

Issue - State: closed - Opened by echumin about 2 months ago - 3 comments

#903 - PyPi release

Pull Request - State: closed - Opened by neurolabusc 2 months ago

#902 - Development

Pull Request - State: closed - Opened by neurolabusc 2 months ago

#901 - Which compile options are included in the prebuilt binaries hosted on gitlab

Issue - State: closed - Opened by dazzag24 2 months ago - 2 comments

#900 - add zlib to wasm compile command and bump version

Pull Request - State: closed - Opened by hanayik 2 months ago

#899 - add zlib to wasm compile command and bump version

Pull Request - State: closed - Opened by hanayik 2 months ago

#898 - Attempt to fix "File too large. Limit for project 'dcm2niix' is 100 MB."

Pull Request - State: closed - Opened by neurolabusc 2 months ago

#897 - Feature request: Add support for High-Throughput JPEG 2000

Issue - State: closed - Opened by dazzag24 2 months ago - 30 comments

#896 - new stable release (v1.0.20241208)

Pull Request - State: closed - Opened by neurolabusc 2 months ago

#895 - Extract ImageComments from each volume as an array

Issue - State: closed - Opened by effigies 3 months ago - 3 comments

#894 - XA61A dicom-enhanced 3-planes localizer stacked in a single volume.

Issue - State: closed - Opened by bpinsard 3 months ago - 7 comments
Labels: acknowledged

#893 - pip version is out of date

Issue - State: closed - Opened by Jolinda 3 months ago - 5 comments

#892 - "USE_STATIC_RUNTIME" set to ON but "libstdc++.a" not found! Set it to OFF

Issue - State: closed - Opened by tashrifbillah 3 months ago - 6 comments

#891 - Segmentation fault

Issue - State: closed - Opened by hajerkr 3 months ago - 4 comments

#890 - TablePosition not outputting in some ".dcm" files but the information is present in the metadata

Issue - State: closed - Opened by po09i 3 months ago - 2 comments

#889 - Inconsistent qform and sform offsets with 3d crop in dcm2niix

Issue - State: closed - Opened by ckovach 3 months ago - 2 comments

#888 - XA30

Issue - State: closed - Opened by neurolabusc 4 months ago - 1 comment

#887 - dcm2niix "splits" the image.

Issue - State: closed - Opened by elijahrockers 4 months ago - 3 comments

#886 - Improve BIDS BEP009 PET support

Issue - State: closed - Opened by neurolabusc 4 months ago

#885 - Incorrect Orientation in SPECT DICOM Multi-frame Reconstructions

Issue - State: closed - Opened by VipeRub 4 months ago - 3 comments

#884 - Migrate from ConversionSoftware{,Version} to use GeneratedBy

Issue - State: closed - Opened by yarikoptic 4 months ago - 1 comment

#883 - Buffer overflow with string procedureStepDescription

Issue - State: closed - Opened by manicombinostics 4 months ago - 1 comment

#882 - Questions About Qform and SForm Derivation

Issue - State: closed - Opened by smcdouga 4 months ago - 1 comment

#881 - Consistency of development and stable branch behavior

Issue - State: closed - Opened by neurolabusc 4 months ago - 24 comments

#880 - Frequency Acquisition Matrix for GEHC Data in JSON Output

Issue - State: closed - Opened by mr-jaemin 4 months ago - 14 comments

#879 - Siemens XA60 warning slice timing

Issue - State: closed - Opened by ndolf 4 months ago - 9 comments

#878 - Better UTF-8 support for BIDS tags

Issue - State: closed - Opened by neurolabusc 4 months ago - 1 comment
Labels: enhancement

#877 - DeidentificationMethod issues

Issue - State: closed - Opened by neurolabusc 4 months ago - 1 comment

#876 - Changes from divest 1.1

Pull Request - State: closed - Opened by jonclayden 4 months ago

#875 - Siemens XA30 incorrect slice timing for multi-band saved as classic DICOM

Issue - State: closed - Opened by neurolabusc 4 months ago - 1 comment

#874 - vertex scalp removed with -x argument

Issue - State: closed - Opened by mauriliogenovese 5 months ago - 1 comment
Labels: acknowledged

#873 - [Not a Bug][Inquiry] 4D T1w's Off of Philips Achieva

Issue - State: closed - Opened by bendhouseart 5 months ago - 5 comments

#872 - refactor file handling in WASM wrapper

Pull Request - State: closed - Opened by hanayik 5 months ago

#871 - Reformat json DeidentificationMethod

Pull Request - State: closed - Opened by CGSchwarzMayo 5 months ago - 2 comments

#870 - XA60 and XA61 no `MultibandAccelerationFactor` with `cmrr_mbep2d_bold`

Issue - State: closed - Opened by benoitberanger 5 months ago - 18 comments

#869 - CMake error when attempting to compile latest development branch

Issue - State: closed - Opened by CGSchwarzMayo 5 months ago - 1 comment

#868 - fatal error: "algorithm" file not found - build fails on MacOS 14.7 with Clang 16

Issue - State: closed - Opened by pmolfese 5 months ago - 3 comments

#867 - Reduce stack pressure

Issue - State: closed - Opened by neurolabusc 5 months ago - 5 comments

#866 - Fix typo found by codespell

Pull Request - State: closed - Opened by DimitriPapadopoulos 5 months ago

#865 - Archive old dcm2niix repository?

Issue - State: closed - Opened by DimitriPapadopoulos 5 months ago - 6 comments

#864 - fix typos found by codespell

Pull Request - State: closed - Opened by DimitriPapadopoulos 5 months ago - 4 comments

#863 - Antipodally reflected bvecs for sagittal DWIs

Issue - State: closed - Opened by Lestropie 5 months ago - 25 comments

#862 - Troubleshooting incorrect import behavior

Issue - State: closed - Opened by annchenknodt 5 months ago - 3 comments

#861 - PR813 issues

Issue - State: closed - Opened by neurolabusc 5 months ago - 1 comment

#860 - SIEMENS XA50 DIFFUSION DATA

Issue - State: closed - Opened by jim-uofu 5 months ago - 4 comments

#859 - Add github pages demo for dcm2niix WASM with Niivue

Issue - State: closed - Opened by hanayik 5 months ago - 1 comment

#858 - webkitRelativePath workaround for safari and allow nested directories

Pull Request - State: closed - Opened by hanayik 5 months ago

#857 - Reformat json DeidentificationMethod

Pull Request - State: closed - Opened by CGSchwarzMayo 6 months ago - 3 comments

#856 - add wasm build for npm package

Pull Request - State: closed - Opened by hanayik 6 months ago

#855 - Feature/add wasm npm module

Pull Request - State: closed - Opened by hanayik 6 months ago

#854 - segmentation fault on s390x systems (big endian)

Issue - State: closed - Opened by emollier 6 months ago - 2 comments

#853 - Error in Mediso Dynamic PET Conversion

Issue - State: closed - Opened by QinQikai 6 months ago - 4 comments

#852 - Total Read-Out Time Documentation update for GEHC

Pull Request - State: closed - Opened by mr-jaemin 6 months ago - 2 comments

#851 - Addition of MAGNITUDE to ImageType of Siemens data

Issue - State: closed - Opened by mharms 6 months ago - 4 comments

#850 - GE TablePosition tableDelta

Pull Request - State: closed - Opened by mr-jaemin 6 months ago - 1 comment

#849 - Incorrect value of PhaseEncodingDirection on Siemens 3D T2w SPACE scans

Issue - State: closed - Opened by mharms 6 months ago - 4 comments

#848 - XA-series missing minor version tracking in sidecar

Issue - State: closed - Opened by bpinsard 6 months ago - 8 comments
Labels: acknowledged

#847 - Total Read-Out Time Documentation update and clarification for GE Hea…

Pull Request - State: closed - Opened by brice82 6 months ago - 2 comments

#846 - Different study/data time, -m option not working

Issue - State: closed - Opened by javijv4 7 months ago - 1 comment

#845 - XA30 myomaps BEATs triggers conversion warnings, unusable nifti

Issue - State: closed - Opened by bpinsard 7 months ago - 6 comments

#844 - Store DICOM field (0018,9093) NumberOfKSpaceTrajectories ?

Issue - State: closed - Opened by baxpr 7 months ago - 2 comments

#843 - Fix corrupted raw nrrd file output on Windows

Pull Request - State: closed - Opened by lassoan 7 months ago

#842 - Revert "Fix corrupted raw nrrd file output on Windows"

Pull Request - State: closed - Opened by neurolabusc 7 months ago

#841 - Fix corrupted raw nrrd file output on Windows

Pull Request - State: closed - Opened by lassoan 7 months ago - 2 comments

#840 - Feature request: Instead of providing a source directory, would it be possible to provide dcm2niix a list of files to be processed?

Issue - State: closed - Opened by BlakeGFitch 7 months ago - 1 comment

#839 - Incorrect 3D reconstruction for enhanced multi-frame MRI

Issue - State: closed - Opened by lassoan 7 months ago - 4 comments

#838 - GE slice timing error

Issue - State: closed - Opened by neurolabusc 7 months ago

#837 - Problems with b2500 and b700 dwi data

Issue - State: closed - Opened by stremblay18 7 months ago - 5 comments

#836 - Error in bvec extraction when UIH diffusion data is converted to nifti

Issue - State: closed - Opened by XYWCQM 7 months ago - 3 comments

#835 - git clone failure?

Issue - State: closed - Opened by marcelzwiers 7 months ago - 2 comments

#834 - Add Return Codes other than 0

Issue - State: closed - Opened by toomanycats 8 months ago - 4 comments

#833 - CI: PyPI release

Pull Request - State: closed - Opened by casperdcl 8 months ago - 1 comment

#832 - Suppress ROI1, ROI2, etc. in conversion

Issue - State: closed - Opened by halfSpinDoctor 8 months ago - 1 comment

#831 - What is `offset` and `Valid 0`

Issue - State: closed - Opened by toomanycats 8 months ago - 7 comments

#830 - Failed conversion with Error: Check sorted order: 4D dataset has 1 volumes, but volume index ranges from 1..###

Issue - State: closed - Opened by ericearl 8 months ago - 5 comments

#829 - PyPI missing releases newer than v1.0.20220715

Issue - State: closed - Opened by ericearl 8 months ago - 4 comments

#828 - How sform is calculate?

Issue - State: closed - Opened by BrunoFFPP 8 months ago - 2 comments

#827 - Philips isotropic DWI b50 not recognized

Issue - State: closed - Opened by JanOP1337 8 months ago - 14 comments

#826 - add MAGNITUDE to ImageType for GE data

Pull Request - State: closed - Opened by bpinsard 9 months ago - 2 comments

#825 - RepetitionTime is sometimes incorrectly calculated

Issue - State: closed - Opened by lsaca05 9 months ago - 9 comments

#824 - Console script return status code

Pull Request - State: closed - Opened by tomhampshire 9 months ago

#823 - Revert "Console script return status code (https://github.com/rordenlab/dcm2n…"

Pull Request - State: closed - Opened by neurolabusc 9 months ago - 1 comment

#822 - The whole image is inverted in the result of the dcm2nii.gz conversion

Issue - State: closed - Opened by angleboy8 9 months ago - 3 comments

#821 - Incorrect output files name for a duel echo image.

Issue - State: closed - Opened by MRIDude 9 months ago - 1 comment

#820 - multi-echo data not recognised

Issue - State: closed - Opened by marcelzwiers 9 months ago

#819 - Siemens XA60 conversion of diffusion data

Issue - State: closed - Opened by jonbpanda 10 months ago - 3 comments

#818 - -x flag not working on PAR file

Issue - State: closed - Opened by madeleinebarter 10 months ago - 3 comments
Labels: acknowledged

#817 - [Question] Image dimensions from the tags

Issue - State: closed - Opened by nilgoyette 10 months ago - 2 comments

GitHub / rordenlab/dcm2niix issues and pull requests