Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / ropensci/webchem issues and pull requests

#418 - RepoRT: a comprehensive repository for small molecule retention times

Issue - State: open - Opened by stitam 3 months ago
Labels: data source

#417 - Get_cid pulls many CIDs, some wrong

Issue - State: open - Opened by daithi45 5 months ago - 2 comments

#416 - pc_sect and section EPA-IRIS-Informtion

Issue - State: open - Opened by c1au6i0 5 months ago - 2 comments

#415 - Add vignettes (back?) to pkgdown website

Issue - State: closed - Opened by Aariq 7 months ago - 2 comments

#414 - update actions/checkout

Pull Request - State: closed - Opened by Aariq 8 months ago

#413 - Improve input validation

Issue - State: open - Opened by Aariq about 1 year ago - 1 comment

#412 - cir_query doesn't return SMILES string even though it exists in PubChem

Issue - State: closed - Opened by tcash21 about 1 year ago - 2 comments

#411 - Expand use of `vcr` in testing

Pull Request - State: open - Opened by Aariq about 1 year ago

#410 - WIP: use `httptest` for API mocking

Pull Request - State: open - Opened by Aariq about 1 year ago

#409 - Update issues templates

Pull Request - State: closed - Opened by Aariq about 1 year ago - 1 comment

#408 - Ensure all CIDs are positive integers when using pc_prop()

Pull Request - State: closed - Opened by stitam about 1 year ago

#407 - Character CID that can't be coerced to numeric in `pc_prop()` results in `NA` output for all CIDs

Issue - State: closed - Opened by schymane about 1 year ago - 13 comments
Labels: bug

#406 - is.na > 1 error

Issue - State: closed - Opened by bmgarcia over 1 year ago - 5 comments

#405 - More edits before releasing v1.3.0

Pull Request - State: closed - Opened by stitam over 1 year ago

#404 - PAN

Pull Request - State: closed - Opened by stitam over 1 year ago

#403 - Remove PAN from README

Pull Request - State: closed - Opened by stitam over 1 year ago

#402 - add DOI badge (#347) and additional use cases (#355) to README

Pull Request - State: closed - Opened by Aariq over 1 year ago - 1 comment

#401 - Defunct PAN functions

Pull Request - State: closed - Opened by stitam over 1 year ago

#400 - Update workflow for R-CMD-check

Pull Request - State: closed - Opened by stitam over 1 year ago

#399 - `pan_query()` still broken. Should it be made defunct for v 1.3.0?

Issue - State: closed - Opened by Aariq over 1 year ago - 5 comments

#398 - Reformat cas

Pull Request - State: closed - Opened by ethanbass over 1 year ago - 4 comments

#397 - Final edits before v1.3.0

Pull Request - State: closed - Opened by stitam over 1 year ago

#395 - Release webchem 1.3.0

Issue - State: closed - Opened by stitam over 1 year ago - 1 comment

#394 - Fix tests for NIST and ChEMBL

Pull Request - State: closed - Opened by stitam over 1 year ago

#393 - Defunct ci_query() and purge ChemIDplus from package

Pull Request - State: closed - Opened by stitam over 1 year ago - 2 comments

#392 - Fix pc_sect() failing on certain CIDs

Pull Request - State: closed - Opened by BrianFFish over 1 year ago - 3 comments

#391 - nist_ri() fails

Issue - State: closed - Opened by stitam over 1 year ago - 5 comments

#390 - ChemIDplus has been retired

Issue - State: closed - Opened by stitam over 1 year ago - 4 comments

#389 - error with etox_basic()

Issue - State: open - Opened by lego-yaw over 1 year ago - 1 comment

#388 - Use `httptest` for API mocking

Issue - State: open - Opened by Aariq over 1 year ago - 7 comments

#387 - improve reliability of `with_cts()`

Issue - State: closed - Opened by Aariq almost 2 years ago - 2 comments
Labels: enhancement

#386 - update to actions/checkout@v3

Pull Request - State: closed - Opened by Aariq almost 2 years ago - 3 comments

#385 - extract PubChem section's content

Issue - State: open - Opened by francoiskroll almost 2 years ago - 2 comments
Labels: enhancement

#384 - fix bug when search matches multiple records

Pull Request - State: closed - Opened by ethanbass almost 2 years ago - 1 comment

#382 - Any way to search by Mass?

Issue - State: open - Opened by mr-september almost 2 years ago - 4 comments
Labels: enhancement

#381 - Common Chemistry CAS API

Issue - State: open - Opened by Aariq almost 2 years ago
Labels: data source

#380 - fix URL for pkgdown

Pull Request - State: closed - Opened by maelle almost 2 years ago - 2 comments

#379 - Return CAS number from nist_ri

Pull Request - State: closed - Opened by ethanbass almost 2 years ago - 21 comments

#378 - Final edits before submitting to CRAN

Pull Request - State: closed - Opened by stitam almost 2 years ago

#377 - Release webchem 1.2.0

Issue - State: closed - Opened by stitam almost 2 years ago

#376 - Fix pkgdown config

Pull Request - State: closed - Opened by stitam almost 2 years ago

#375 - Fix for #374, adds "µ" to column name.

Pull Request - State: closed - Opened by Aariq almost 2 years ago - 3 comments

#374 - RI Extraction issue

Issue - State: closed - Opened by Ellakai almost 2 years ago - 3 comments

#373 - Fix pkgdown config for reference

Issue - State: closed - Opened by maelle almost 2 years ago - 3 comments

#372 - Update ChemSpider to accept API keys provided during function call

Pull Request - State: closed - Opened by stitam almost 2 years ago

#371 - Issue template that directs people to Discussions

Issue - State: closed - Opened by Aariq almost 2 years ago

#370 - no API key stored for ChemSpider

Issue - State: closed - Opened by Ellakai almost 2 years ago - 6 comments
Labels: bug

#369 - Add sleep to ChemSpider functions

Pull Request - State: closed - Opened by stitam about 2 years ago - 2 comments

#368 - get_csid() always returning error "Service not available. Returning NA."

Issue - State: closed - Opened by CesarIsguerra about 2 years ago - 8 comments
Labels: bug

#367 - cir_query fails when the identifier is a SMILES containing a '%'.

Issue - State: closed - Opened by f-puig over 2 years ago - 2 comments

#366 - Update a documentation URL

Pull Request - State: closed - Opened by stitam over 2 years ago

#365 - Update comments for CRAN Team

Pull Request - State: closed - Opened by stitam over 2 years ago

#364 - Final edits before releasing webchem 1.1.3

Pull Request - State: closed - Opened by stitam over 2 years ago

#363 - Release webchem 1.1.3

Issue - State: closed - Opened by stitam over 2 years ago - 4 comments

#359 - Use dontrun instead of donttest everywhere

Pull Request - State: closed - Opened by stitam over 2 years ago

#357 - get_cid() not working with message "Service not available"

Issue - State: closed - Opened by cujoisa over 2 years ago

#356 - Update cts_convert to accept numeric input

Pull Request - State: closed - Opened by stitam over 2 years ago

#355 - Update use cases

Issue - State: closed - Opened by Aariq over 2 years ago - 1 comment

#354 - pc_sect() fails when requesting cas for cid 132971

Issue - State: closed - Opened by stitam over 2 years ago - 3 comments
Labels: bug

#353 - Functions for accessing a new database - ChEMBL

Pull Request - State: closed - Opened by stitam over 2 years ago - 5 comments

#351 - Check for possible edge case in `bcpc_query()`

Issue - State: open - Opened by Aariq over 2 years ago - 2 comments
Labels: question

#350 - Change `cir_query()` output to tibble #289

Pull Request - State: closed - Opened by Aariq over 2 years ago - 3 comments

#349 - bcpc_query: Parse two (sub)activities correctly

Pull Request - State: closed - Opened by jranke over 2 years ago - 10 comments

#348 - In bcpc_query, the case of more than one activity is not properly handled

Issue - State: closed - Opened by jranke over 2 years ago - 1 comment

#347 - Add DOI badge to README

Issue - State: closed - Opened by Aariq over 2 years ago

#346 - Fix url construction for smiles queries

Pull Request - State: closed - Opened by stitam over 2 years ago - 1 comment

#345 - changes to comply with tibble 3.0.0+

Pull Request - State: closed - Opened by Aariq over 2 years ago

#344 - removed some remnants of `match` argument in ci_query() documentation…

Pull Request - State: closed - Opened by Aariq over 2 years ago

#343 - Update pkgdown

Pull Request - State: closed - Opened by Aariq almost 3 years ago - 1 comment

#342 - Final edits before v1.1.2

Pull Request - State: closed - Opened by stitam almost 3 years ago - 1 comment

#341 - Release webchem 1.1.2

Issue - State: closed - Opened by stitam almost 3 years ago - 1 comment

#339 - The alanwood ISO common name site has moved

Pull Request - State: closed - Opened by jranke almost 3 years ago - 6 comments

#338 - `match = "exact"` option

Issue - State: closed - Opened by Aariq almost 3 years ago - 1 comment
Labels: enhancement, consistent api

#337 - get_cid service not available

Issue - State: closed - Opened by bru-dot-edu almost 3 years ago - 5 comments
Labels: bug

#336 - fix ping_pubchem_pw() #335

Pull Request - State: closed - Opened by Aariq almost 3 years ago - 2 comments

#335 - `ping_pubchem_pw()` returning FALSE when pubchem is not down

Issue - State: closed - Opened by Aariq almost 3 years ago - 1 comment
Labels: bug

#334 - Bump up version number after fixing a bug

Pull Request - State: closed - Opened by stitam almost 3 years ago

#333 - Convert CAS to SMILES

Issue - State: open - Opened by pstahlhofen almost 3 years ago - 8 comments

#332 - Fix ping_pubchem_pw

Pull Request - State: closed - Opened by stitam almost 3 years ago

#331 - service not available

Issue - State: closed - Opened by QizhiSu almost 3 years ago - 11 comments

#330 - tibble v3.0.0 compatibility updates

Issue - State: closed - Opened by Aariq almost 3 years ago - 1 comment

#329 - ci_query error 'list cannot be coerced to double'

Issue - State: closed - Opened by Hlynur-taekjavordur almost 3 years ago - 5 comments
Labels: bug

#328 - Alan Wood Pesticide Compendium Adress has moved

Issue - State: closed - Opened by andschar about 3 years ago - 2 comments

#327 - Translating CID into common name report bad request?

Issue - State: open - Opened by wanglu2014 over 3 years ago - 3 comments

#326 - How to translate Human Metabolome database id into chebi id?

Issue - State: closed - Opened by wanglu2014 over 3 years ago - 1 comment

#325 - Why 'Bad Gateway (HTTP 502) happens'?

Issue - State: closed - Opened by wanglu2014 over 3 years ago - 1 comment

#324 - How to translate fuzzy metabolite name into identifier id?

Issue - State: closed - Opened by wanglu2014 over 3 years ago - 2 comments

#323 - Issue with is.cas function

Issue - State: closed - Opened by tmoradkh over 3 years ago - 11 comments
Labels: bug, low priority

#322 - Use GitHub release after each CRAN update?

Issue - State: open - Opened by maelle over 3 years ago - 1 comment

#321 - ChemSpider to use testthat 3

Pull Request - State: closed - Opened by stitam over 3 years ago

#320 - Export Molfiles with write_mol()

Pull Request - State: closed - Opened by stitam over 3 years ago

#319 - Update ChemSpider tests to use vcr

Pull Request - State: closed - Opened by stitam over 3 years ago - 1 comment

#317 - Activate testthat 3rd edition

Pull Request - State: closed - Opened by stitam over 3 years ago

#316 - Remove ChemIDPlus query by name

Pull Request - State: closed - Opened by stitam over 3 years ago

#315 - ci_query querying certain CAS rn returns information from another CAS rn

Issue - State: closed - Opened by b8e5n over 3 years ago - 2 comments
Labels: bug

#314 - Final final edits before releasing 1.1.1

Pull Request - State: closed - Opened by stitam over 3 years ago

#312 - Use names instead of stats::setNames

Pull Request - State: closed - Opened by stitam over 3 years ago - 1 comment