ropensci/taxadb issues and pull requests

#123 - Update databases on taxadb-cache

Issue - State: open - Opened by AnneSoBen 22 days ago - 1 comment

#122 - Hybrids not denoted correctly in Catalogue of Life db

Issue - State: closed - Opened by jtmiller28 3 months ago - 2 comments

#121 - remove 'spp.' epithet

Pull Request - State: closed - Opened by mattiaghilardi 6 months ago - 1 comment

#120 - `clean_names()` does not remove 'spp.' epithet

Issue - State: closed - Opened by mattiaghilardi 6 months ago - 1 comment

#119 - update taxa_tbl, silence unnecessary warning (#118)

Pull Request - State: closed - Opened by jasonO6359 7 months ago - 1 comment

#118 - Warning message when calling get_ids

Issue - State: closed - Opened by jasonO6359 7 months ago - 1 comment

#117 - get_names 'could not convert string' error with NCBI

Issue - State: open - Opened by miistakis over 1 year ago - 2 comments

#116 - Reproducing Table 6 in Norman et al. (MEE 2020)

Issue - State: closed - Opened by gregor-fausto over 1 year ago - 4 comments

#115 - add a tag/release for 0.2.0

Issue - State: open - Opened by black-snow over 1 year ago

#114 - filter_name for higher ranks doesn't work with ITIS

Issue - State: closed - Opened by atn38 over 1 year ago - 4 comments

#113 - documentation of supported providers at different places do not match

Issue - State: open - Opened by atn38 over 1 year ago - 1 comment

#112 - Single-name requests on NCBI are very slow

Issue - State: open - Opened by tpoisot over 1 year ago - 6 comments

#111 - IUCN Issues

Issue - State: open - Opened by jt-tbc over 1 year ago - 1 comment

#110 - 22.12

Pull Request - State: closed - Opened by cboettig over 1 year ago

#109 - 'td_create()' fails with The Plant List

Issue - State: open - Opened by kamapu almost 2 years ago - 1 comment

#108 - Wrong species matched in tutorial article

Issue - State: open - Opened by frousseu about 2 years ago - 1 comment

#107 - Adding Discover Life as an Authority

Issue - State: open - Opened by jtmiller28 about 2 years ago

#106 - Cannot create database

Issue - State: open - Opened by joelnitta about 2 years ago - 1 comment

#105 - Compatibility with dev dbplyr

Pull Request - State: closed - Opened by mgirlich over 2 years ago - 1 comment

#104 - Update README.Rmd

Pull Request - State: closed - Opened by maelle over 2 years ago

#103 - question: how to programmatically get a list of supported databases?

Issue - State: open - Opened by atn38 over 2 years ago - 4 comments

#102 - Unable to create "slb" and "wd" database

Issue - State: open - Opened by brunobrr over 2 years ago - 1 comment

#101 - tpl database

Issue - State: open - Opened by brunobrr over 2 years ago - 1 comment

#100 - scientific name authors?

Issue - State: open - Opened by joelnitta over 2 years ago - 6 comments

#99 - fix pkgdown failure

Pull Request - State: closed - Opened by maelle almost 3 years ago

#98 - patch for errors on fedora

Pull Request - State: closed - Opened by cboettig almost 3 years ago

#97 - duckdb version

Issue - State: closed - Opened by andrew-torda almost 3 years ago - 2 comments

#96 - Broken provenance entries

Issue - State: closed - Opened by andrew-torda almost 3 years ago - 3 comments

#95 - safe_right_join consuming memory

Issue - State: open - Opened by lucas-jardim about 3 years ago - 3 comments

#94 - IO Error: Trying to read a database file with version number 11, but we can only read version 15.

Issue - State: closed - Opened by amoeba over 3 years ago - 2 comments

#93 - Mention paper in vignette and README

Pull Request - State: closed - Opened by Rekyt over 3 years ago

#92 - Link to the published paper and CITATION file

Issue - State: open - Opened by Rekyt over 3 years ago - 3 comments

#91 - `td_create` Failed to connect

Issue - State: closed - Opened by DanieleVeri over 3 years ago - 21 comments

#90 - tests should use test data

Pull Request - State: closed - Opened by cboettig over 3 years ago

#89 - error: could not resolve host hash-archive.org

Issue - State: closed - Opened by vsbuffalo over 3 years ago - 5 comments

#88 - IUCN database

Issue - State: open - Opened by ccheng91 over 3 years ago - 5 comments

#87 - read_only connections

Issue - State: open - Opened by cboettig over 3 years ago

#86 - use a GitHub release

Issue - State: closed - Opened by maelle over 3 years ago - 2 comments

#85 - Minor patches

Pull Request - State: closed - Opened by cboettig over 3 years ago

#84 - handle duckdb connection as read_only by default

Pull Request - State: closed - Opened by cboettig over 3 years ago - 2 comments

#83 - Error message when calling filter_by

Issue - State: closed - Opened by juanchocarvajal over 3 years ago - 1 comment

#82 - Warning message when calling get_ids

Issue - State: closed - Opened by dochvam over 3 years ago - 1 comment

#81 - change `top_n` by `filter` and `max`

Pull Request - State: closed - Opened by kguidonimartins almost 4 years ago - 2 comments

#80 - get_names Error: no such function: top_n_rank

Issue - State: closed - Opened by Geiziane almost 4 years ago - 2 comments

#79 - import database files via content_id

Pull Request - State: closed - Opened by cboettig about 4 years ago - 1 comment

#78 - get_names result order

Issue - State: closed - Opened by lisafisler about 4 years ago - 9 comments

#77 - Arkdb native

Pull Request - State: closed - Opened by cboettig about 4 years ago

#76 - NCBI taxonomy - missing records

Issue - State: closed - Opened by wykhuh about 4 years ago - 4 comments

#75 - Move MonetDBLite to imports now that it's on CRAN.

Pull Request - State: closed - Opened by karinorman about 4 years ago

#74 - Revisions

Pull Request - State: closed - Opened by karinorman over 4 years ago

#73 - A bit more text, re-organization, spell check

Pull Request - State: closed - Opened by cboettig over 4 years ago - 1 comment

#72 - Paper

Pull Request - State: closed - Opened by cboettig over 4 years ago

#71 - Add optional support for duckdb

Pull Request - State: closed - Opened by cboettig over 4 years ago

#70 - Patch test data

Pull Request - State: closed - Opened by cboettig over 4 years ago

#69 - rOpenSci onboarding to do

Issue - State: closed - Opened by karinorman over 4 years ago

#68 - DB versions

Pull Request - State: closed - Opened by cboettig almost 5 years ago

#67 - Examples

Pull Request - State: closed - Opened by karinorman almost 5 years ago

#66 - By to filter

Pull Request - State: closed - Opened by karinorman almost 5 years ago

#65 - Import RSQLite and clarify the multi-db methods

Pull Request - State: closed - Opened by cboettig almost 5 years ago

#64 - Reviewer to do

Issue - State: closed - Opened by karinorman almost 5 years ago - 2 comments

#63 - Initial reviewer response

Issue - State: closed - Opened by karinorman almost 5 years ago - 1 comment

#62 - Kari paper

Pull Request - State: closed - Opened by karinorman about 5 years ago

#61 - Latest ITIS table drops ID's

Issue - State: closed - Opened by karinorman about 5 years ago - 2 comments

#60 - update in-mem branch with changes from master

Pull Request - State: closed - Opened by cboettig over 5 years ago

#59 - Makes invocation of download.file consistent with that in td_create

Pull Request - State: closed - Opened by hlapp over 5 years ago - 1 comment

#58 - taxadb breaks CI for RNeXML

Issue - State: closed - Opened by hlapp over 5 years ago - 1 comment

#57 - Common names

Pull Request - State: closed - Opened by karinorman over 5 years ago - 2 comments

#56 - Fuzzy filter

Pull Request - State: closed - Opened by cboettig over 5 years ago

#55 - include an input column for the synonym table

Pull Request - State: closed - Opened by cboettig over 5 years ago

#54 - synonyms() should return an column of the inputs

Issue - State: closed - Opened by karinorman over 5 years ago

#53 - Add remotes for MonetDBLite

Pull Request - State: closed - Opened by cboettig over 5 years ago

#52 - MonetDBLite removed from CRAN

Issue - State: closed - Opened by poldham over 5 years ago - 2 comments

#51 - by_common should search all known common names

Issue - State: closed - Opened by cboettig over 5 years ago - 2 comments

#50 - Fuzzy filter

Pull Request - State: closed - Opened by cboettig over 5 years ago

#49 - by_common for providers w/out common names

Issue - State: closed - Opened by karinorman over 5 years ago - 1 comment

#48 - fix case in input column

Pull Request - State: closed - Opened by cboettig over 5 years ago

#47 - Case-sensitive "input" column for by_ functions

Issue - State: closed - Opened by karinorman over 5 years ago

#46 - Writing -- revised README and tutorial

Pull Request - State: closed - Opened by cboettig over 5 years ago

#45 - Make data_raw scripts into first-class citizens

Issue - State: closed - Opened by cboettig over 5 years ago - 1 comment

#44 - generate citations to original references by identifier

Issue - State: open - Opened by cboettig over 5 years ago

#43 - Update docs

Pull Request - State: closed - Opened by cboettig over 5 years ago

#42 - Revise API

Pull Request - State: closed - Opened by cboettig over 5 years ago

#41 - Adds get_names

Pull Request - State: closed - Opened by cboettig over 5 years ago

#40 - Testing ID conditions / assumptions across providers

Issue - State: closed - Opened by cboettig over 5 years ago - 2 comments

#39 - Function interface -- better function names etc

Issue - State: closed - Opened by cboettig over 5 years ago

#38 - patch-duplicates

Pull Request - State: closed - Opened by cboettig over 5 years ago

#37 - Patch get ids again

Pull Request - State: closed - Opened by cboettig over 5 years ago

#36 - Synonyms

Pull Request - State: closed - Opened by cboettig over 5 years ago

#35 - Patch descendants

Pull Request - State: closed - Opened by cboettig over 5 years ago

#34 - fix handling of NAs in get_ids()

Pull Request - State: closed - Opened by cboettig over 5 years ago

#33 - Clean joins

Pull Request - State: closed - Opened by cboettig over 5 years ago

#32 - authority -> provider

Pull Request - State: closed - Opened by cboettig over 5 years ago

#31 - case-insensitive matching

Pull Request - State: closed - Opened by cboettig over 5 years ago

#30 - Consider a "clean" name column for matching against

Issue - State: closed - Opened by cboettig over 5 years ago - 8 comments

#29 - differences in case prevent matching

Issue - State: closed - Opened by cboettig over 5 years ago - 1 comment

#28 - Fix ITIS postgres export

Issue - State: closed - Opened by cboettig over 5 years ago - 1 comment

#27 - Darwin core-based schema

Pull Request - State: closed - Opened by cboettig over 5 years ago

#26 - Handling multiple matching synonyms

Issue - State: closed - Opened by cboettig over 5 years ago - 1 comment

#25 - Use DWC terms only in defining schemas?

Issue - State: closed - Opened by cboettig over 5 years ago - 1 comment

#24 - De-duplicate names in taxonid tables

Pull Request - State: closed - Opened by cboettig over 5 years ago

GitHub / ropensci/taxadb issues and pull requests