Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / ropensci/taxa issues and pull requests

#212 - vctrs revdep issues

Issue - State: open - Opened by DavisVaughan over 2 years ago - 3 comments

#211 - Issues with CRAN check on 2022-03-10

Issue - State: open - Opened by kamapu over 2 years ago - 1 comment

#210 - Error when using parse_tax_data function

Issue - State: open - Opened by emankhalaf over 2 years ago - 1 comment

#209 - Make taxa recognized as R repository by GitHub Linguist

Pull Request - State: closed - Opened by Rekyt over 3 years ago - 2 comments

#208 - creating a taxonomy database for PR2

Issue - State: open - Opened by ctekellogg almost 4 years ago - 10 comments

#207 - error in db_ref$get() after using $set()

Issue - State: closed - Opened by sckott about 4 years ago - 2 comments

#206 - Error: Failed to install 'taxa' from GitHub

Issue - State: open - Opened by sdhutchins over 4 years ago - 1 comment

#205 - Update README.md

Pull Request - State: closed - Opened by marsnone almost 5 years ago - 1 comment

#204 - import of taxdump files

Issue - State: open - Opened by nick-youngblut almost 5 years ago - 3 comments

#203 - No taxon_rank information when parsing from NCBI taxonomy

Issue - State: open - Opened by janstrauss1 almost 5 years ago - 1 comment

#202 - HTTP errors when parsing long taxon_id list

Issue - State: open - Opened by janstrauss1 almost 5 years ago - 12 comments

#201 - use cases section a bit outdated

Issue - State: open - Opened by maelle about 5 years ago - 4 comments

#200 - Function to produce html/latex table of taxonomic and associated data ?

Issue - State: open - Opened by zachary-foster over 5 years ago - 3 comments
Labels: enhancement

#199 - Assign taxon_rank based on n_supertaxa

Issue - State: open - Opened by brendanf over 5 years ago - 1 comment

#198 - possible to put taxize in Suggests?

Issue - State: open - Opened by sckott over 5 years ago - 2 comments

#197 - Vectorizing some classes and reorganizing inheritance hierarchy

Issue - State: open - Opened by zachary-foster over 5 years ago - 49 comments

#196 - `taxa`: way to do operations on objects within it

Issue - State: closed - Opened by sckott almost 6 years ago - 4 comments

#195 - Is a `head` function needed for `taxmap`?

Issue - State: closed - Opened by zachary-foster almost 6 years ago - 2 comments

#194 - Print method idea: tidy lists

Issue - State: open - Opened by zachary-foster almost 6 years ago

#193 - news

Issue - State: closed - Opened by sckott almost 6 years ago - 1 comment

#191 - taxonomy_table function issue with add_id_column parameter.

Issue - State: closed - Opened by grabear almost 6 years ago - 1 comment

#190 - print_tree printing lots of NAs instead of tree

Issue - State: open - Opened by zachary-foster almost 6 years ago
Labels: bug, help wanted

#189 - Update 'taxon_ids' to 'taxon_id' for consistency.

Pull Request - State: closed - Opened by grabear almost 6 years ago - 1 comment

#188 - Filter_obs error.

Issue - State: closed - Opened by grabear about 6 years ago - 14 comments

#187 - No Date in DESCRIPTION file

Issue - State: closed - Opened by sdhutchins about 6 years ago - 2 comments

#186 - invalid NSE warning when using full path to variable

Issue - State: open - Opened by zachary-foster about 6 years ago
Labels: bug

#184 - Phylogeny in a taxmap?

Issue - State: open - Opened by sckott about 6 years ago - 5 comments

#183 - git tag version released to cran

Issue - State: closed - Opened by sckott about 6 years ago - 1 comment

#182 - Make `filter_obs` default to filtering all datasets

Issue - State: open - Opened by zachary-foster over 6 years ago

#181 - Print method bugs when a table only has taxon ID

Issue - State: closed - Opened by zachary-foster over 6 years ago
Labels: bug

#180 - Need non-NSE versions of functions

Issue - State: open - Opened by zachary-foster over 6 years ago

#177 - Speed up `parse_tax_data`

Issue - State: closed - Opened by zachary-foster over 6 years ago

#175 - Allow parsing functions to use reversed classifications

Issue - State: closed - Opened by zachary-foster over 6 years ago - 3 comments

#173 - Look into cli for adding text trees

Issue - State: closed - Opened by zachary-foster over 6 years ago - 5 comments

#172 - New function(s) to add taxa to a taxonomy

Issue - State: open - Opened by zachary-foster over 6 years ago - 6 comments

#171 - hex sticker

Issue - State: closed - Opened by zachary-foster over 6 years ago - 3 comments

#167 - `lookup_tax_data` no errors messages when downloads fail

Issue - State: closed - Opened by zachary-foster over 6 years ago
Labels: bug

#166 - Package size NOTE

Issue - State: closed - Opened by zachary-foster over 6 years ago - 5 comments

#165 - Fix odd names in `leaves` output when `simplify = TRUE`

Issue - State: closed - Opened by zachary-foster over 6 years ago
Labels: bug

#164 - `taxmap` print bug when printing empty tibbles?

Issue - State: closed - Opened by zachary-foster over 6 years ago
Labels: bug

#163 - Make help topics dedicated to NSE and R6/S3 syntax

Issue - State: open - Opened by zachary-foster over 6 years ago

#162 - Only print progress bars during interactive use

Issue - State: closed - Opened by zachary-foster over 6 years ago

#161 - Parsing vignette

Issue - State: open - Opened by zachary-foster over 6 years ago - 2 comments

#160 - Add demonstration of scalability and speed.

Issue - State: open - Opened by zachary-foster over 6 years ago

#159 - Add example somewhere for how to reassign data to a rank

Issue - State: open - Opened by zachary-foster over 6 years ago
Labels: cookbook recipe

#158 - Consider moving development version to its own branch

Issue - State: closed - Opened by zachary-foster over 6 years ago - 2 comments

#156 - Expand documentation for "simplify" option

Issue - State: open - Opened by zachary-foster over 6 years ago

#155 - CRAN release 2.1

Issue - State: closed - Opened by zachary-foster over 6 years ago - 9 comments

#154 - Consider allowing the data set to be specified when using NSE

Issue - State: open - Opened by zachary-foster over 6 years ago - 5 comments

#153 - Add warning when a duplicated name is accessed with NSE

Issue - State: closed - Opened by zachary-foster over 6 years ago

#151 - Add pkgdown website and reduce readme

Issue - State: closed - Opened by zachary-foster over 6 years ago - 1 comment

#150 - Add proper MIT License in LICENSE file

Issue - State: closed - Opened by zachary-foster over 6 years ago - 10 comments

#149 - Consider moving CONDUCT.md to .github directory

Issue - State: closed - Opened by zachary-foster over 6 years ago - 4 comments

#148 - zero length vectors mess up print method a bit

Issue - State: closed - Opened by zachary-foster over 6 years ago - 2 comments
Labels: bug

#147 - taxmap/taxonomy print method change idea

Issue - State: open - Opened by zachary-foster over 6 years ago - 3 comments

#146 - Deemphasize non-data parts of print methods like tibbles do

Issue - State: open - Opened by zachary-foster over 6 years ago - 1 comment

#145 - Add database taxon ID checking via regex/taxize

Issue - State: open - Opened by zachary-foster over 6 years ago - 3 comments

#144 - Add regexes for `database_list`

Issue - State: open - Opened by zachary-foster over 6 years ago - 7 comments

#141 - Add progress bars for `lookup_tax_data`

Issue - State: closed - Opened by zachary-foster over 6 years ago - 1 comment

#140 - Reduce spamming of "No API key" error in `lookup_tax_data`

Issue - State: closed - Opened by zachary-foster over 6 years ago - 1 comment

#139 - Add setters/accessors to basic classes

Issue - State: open - Opened by zachary-foster over 6 years ago - 11 comments

#138 - Possible issue with defining hierarchies- error when calling hierarchy

Issue - State: closed - Opened by lindsayveazey over 6 years ago - 4 comments

#137 - For fuzzy matching of taxon names, report name changes

Issue - State: closed - Opened by zachary-foster over 6 years ago

#132 - Need better error msg when invalid colum specified

Issue - State: closed - Opened by zachary-foster almost 7 years ago

#131 - `parse_tax_data` should be able to generate default column names

Issue - State: closed - Opened by zachary-foster almost 7 years ago
Labels: bug

#130 - Relationship with `taxlist`

Issue - State: open - Opened by arendsee almost 7 years ago - 13 comments

#129 - Consolidate documentation and code for shared options

Issue - State: open - Opened by zachary-foster almost 7 years ago

#128 - Make default `value` `"taxon_indexes"`

Issue - State: closed - Opened by zachary-foster almost 7 years ago

#127 - refactor `leaves` to return a vector per taxon like `subtaxa`

Issue - State: closed - Opened by zachary-foster almost 7 years ago - 1 comment

#126 - new function: `leaves_apply`

Issue - State: closed - Opened by zachary-foster almost 7 years ago

#125 - Add codemeta file

Issue - State: closed - Opened by sckott almost 7 years ago - 3 comments

#124 - Add color/formatting to output of print methods

Issue - State: closed - Opened by zachary-foster almost 7 years ago - 14 comments

#121 - `mutate_obs`: create new vector/table/list if `target` is unknown

Issue - State: closed - Opened by zachary-foster almost 7 years ago - 2 comments

#120 - Add `n_leaves`/`n_tips` function

Issue - State: closed - Opened by zachary-foster almost 7 years ago

#116 - filter_taxa errors when no taxa pass filter

Issue - State: closed - Opened by zachary-foster almost 7 years ago
Labels: bug

#113 - `parse_tax_data`: incorperate rank info

Issue - State: closed - Opened by zachary-foster almost 7 years ago

#101 - implement mapping to/support for darwin core terms

Issue - State: open - Opened by sckott about 7 years ago - 8 comments

#98 - Look into replacing class flow chart with DiagrammeR flow chart

Issue - State: closed - Opened by zachary-foster about 7 years ago - 2 comments

#94 - Add a way to set taxon names/ranks for a taxonomy/taxmap object

Issue - State: closed - Opened by zachary-foster over 7 years ago - 1 comment

#90 - Think about the best way to handle failed downloads

Issue - State: closed - Opened by zachary-foster over 7 years ago - 1 comment

#58 - Add function for tabular output of `taxonomy` and `taxmap`

Issue - State: open - Opened by zachary-foster over 7 years ago - 4 comments

#20 - Add `taxon_names` and `taxon_ids` to NSE list

Pull Request - State: closed - Opened by zachary-foster over 7 years ago - 1 comment

#18 - Rebuild taxmap

Pull Request - State: closed - Opened by zachary-foster over 7 years ago - 7 comments

#17 - Changes and additions to `Taxonomy`

Pull Request - State: closed - Opened by zachary-foster almost 8 years ago

#8 - taxa class reworking nearly done, merging into master

Pull Request - State: closed - Opened by sckott about 8 years ago