ropensci/rsnps issues and pull requests

#174 - Question: Archived on 2023-07-09 for policy violation?

Issue - State: open - Opened by ramiromagno over 1 year ago - 2 comments
Labels: Bug

#173 - Patch t171

Pull Request - State: closed - Opened by jooolia over 1 year ago

#172 - Pull request v0.6.0

Pull Request - State: closed - Opened by jooolia over 1 year ago

#171 - Release rsnps 0.6.0

Issue - State: open - Opened by jooolia over 1 year ago - 3 comments

#170 - small update to docs generated by roxygen.

Pull Request - State: closed - Opened by jooolia over 1 year ago

#169 - quick update for functions.

Issue - State: closed - Opened by jooolia over 1 year ago - 1 comment
Labels: Bug

#168 - using vcr to add some tests

Pull Request - State: closed - Opened by jooolia over 1 year ago - 1 comment

#167 - Improve test coverage

Issue - State: closed - Opened by jooolia over 1 year ago - 2 comments
Labels: Feature

#166 - fix failing test for FTO by adding new locus.

Pull Request - State: closed - Opened by jooolia over 1 year ago

#165 - Master branch failing due to updated snp record

Issue - State: closed - Opened by jooolia over 1 year ago
Labels: Bug

#164 - Add support for a nested merging of a snp.

Pull Request - State: closed - Opened by jooolia almost 2 years ago

#163 - snp without class fails with ncbi_snp_query()

Issue - State: closed - Opened by jooolia almost 2 years ago - 1 comment
Labels: Bug

#162 - Fix failure and add warning message for unsupported snp

Pull Request - State: closed - Opened by jooolia almost 2 years ago

#161 - Updating to new cranchecks static site.

Pull Request - State: closed - Opened by jooolia almost 2 years ago

#160 - Add extra GET call to response 500s

Pull Request - State: closed - Opened by jooolia almost 2 years ago

#159 - ncbi_snp_query() is no longer able to search more than 6 SNPs at the same time

Issue - State: closed - Opened by Louwai1 almost 2 years ago - 8 comments
Labels: Bug

#158 - Change to new cran checks badge URL

Issue - State: closed - Opened by sckott almost 2 years ago - 2 comments
Labels: Feature

#157 - ncbi_snp_query() breaks when snps contains rsid of SNP that is no longer supported by dbSNP

Issue - State: closed - Opened by ellisifnygaard almost 2 years ago - 2 comments
Labels: Bug

#156 - T67 fix name duplication in allgensnp()

Pull Request - State: closed - Opened by jooolia almost 2 years ago

#155 - T75 api key

Pull Request - State: closed - Opened by jooolia about 2 years ago

#154 - Fix styling, some typos and update vignette

Pull Request - State: closed - Opened by jooolia about 2 years ago

#153 - Update code styling of package.

Issue - State: closed - Opened by jooolia about 2 years ago - 1 comment
Labels: Feature

#152 - Adding updated pkgdown site which includes the tech note.

Pull Request - State: closed - Opened by jooolia over 2 years ago

#151 - Update pkgdown site for completion of release 0.5.0

Issue - State: closed - Opened by jooolia over 2 years ago - 2 comments
Labels: Release

#150 - Get the MAF for >1M SNPs from european reference data

Issue - State: closed - Opened by Mahantesh-Biradar over 2 years ago - 1 comment

#149 - Attempt to make ncbi_snp_query() compatible with version GRCh37

Pull Request - State: open - Opened by cruzpazv over 2 years ago - 4 comments

#148 - Revive ld_search()

Issue - State: open - Opened by sinarueeger almost 3 years ago - 1 comment
Labels: Feature

#147 - release 0.5.0

Pull Request - State: closed - Opened by jooolia almost 3 years ago

#146 - add blogpost [WIP, don't merge]

Pull Request - State: closed - Opened by sinarueeger almost 3 years ago - 2 comments

#145 - Release: Update cran comments

Pull Request - State: closed - Opened by sinarueeger almost 3 years ago - 1 comment

#144 - Release: news.md

Pull Request - State: closed - Opened by sinarueeger almost 3 years ago - 2 comments

#143 - Release rsnps 0.5.0

Issue - State: closed - Opened by jooolia almost 3 years ago - 9 comments

#142 - Support for additional allele frequencies frequencies (from different databases)

Pull Request - State: closed - Opened by sinarueeger almost 3 years ago - 1 comment

#141 - Release rsnps 0.4.1

Issue - State: closed - Opened by jooolia almost 3 years ago - 1 comment

#140 - Precompile vignette to speed up R CMD check and CI checks.

Pull Request - State: closed - Opened by jooolia almost 3 years ago - 1 comment

#139 - Switch from RJSONIO to jsonlite in ncbi_snp_query()

Pull Request - State: closed - Opened by jooolia almost 3 years ago - 1 comment

#138 - Update branch

Pull Request - State: closed - Opened by sinarueeger almost 3 years ago

#137 - T134 fix http error

Pull Request - State: closed - Opened by jooolia about 3 years ago

#136 - Merge dev into T97/srr to have all vignette related changes.

Pull Request - State: closed - Opened by sinarueeger about 3 years ago

#135 - How to deal with long running vignette chunk?

Issue - State: closed - Opened by jooolia about 3 years ago - 1 comment
Labels: Bug

#134 - Fix issues with http version

Issue - State: closed - Opened by jooolia about 3 years ago - 1 comment
Labels: Bug

#133 - Removed vignettes from inst/, forcing version http1.1, and updating test for ncbi_snp_query()

Pull Request - State: closed - Opened by jooolia about 3 years ago - 6 comments

#132 - [obsolete] Support for additional allele frequencies frequencies (from different databases)

Pull Request - State: closed - Opened by sinarueeger over 3 years ago - 8 comments

#131 - [WIP] T97/sr

Pull Request - State: closed - Opened by sinarueeger over 3 years ago

#130 - Github issue templates (2nd attempt)

Pull Request - State: closed - Opened by sinarueeger over 3 years ago - 2 comments

#129 - Github issue templates

Pull Request - State: closed - Opened by sinarueeger over 3 years ago

#128 - How to find Disease name using RS ID number

Issue - State: closed - Opened by Sububioinfo over 3 years ago - 1 comment

#127 - Missing genotype for some SNPs in some users in openSNP

Issue - State: closed - Opened by nokimchen over 3 years ago - 1 comment

#126 - Frequency by ancestory

Issue - State: closed - Opened by wigge206 over 3 years ago - 1 comment
Labels: Feature

#125 - Replace TravisCI with Github actions

Pull Request - State: closed - Opened by jooolia almost 4 years ago

#124 - T123 GitHub actions

Pull Request - State: closed - Opened by jooolia about 4 years ago - 4 comments

#123 - Update CI

Issue - State: closed - Opened by sinarueeger about 4 years ago - 2 comments

#122 - Develop function that has chr:pos as input and rsid as output

Issue - State: open - Opened by sinarueeger about 4 years ago - 1 comment
Labels: Feature

#121 - fix https, web address changes and missing trailing slashes

Pull Request - State: closed - Opened by jooolia about 4 years ago - 1 comment

#120 - T102 update cran comments

Pull Request - State: closed - Opened by jooolia over 4 years ago - 3 comments

#119 - I want to get rs id using Chr and START END data

Issue - State: closed - Opened by Mahantesh-Biradar over 4 years ago - 2 comments

#118 - SR [IN PROGRESS] resolution of comments from Scott in PR #114 (Sina)

Pull Request - State: closed - Opened by sinarueeger over 4 years ago - 4 comments

#117 - T114 sr

Pull Request - State: closed - Opened by sinarueeger over 4 years ago

#116 - [IN PROGRESS] resolution of comments from Scott in PR #114.

Pull Request - State: closed - Opened by jooolia over 4 years ago - 4 comments

#115 - Description suggests update 102

Pull Request - State: closed - Opened by jooolia over 4 years ago - 6 comments

#114 - Merge release candidate dev into master before submitting to CRAN

Pull Request - State: closed - Opened by jooolia over 4 years ago - 9 comments

#113 - updated version in DESCRIPTION to match the version in NEWS.MD

Pull Request - State: closed - Opened by jooolia over 4 years ago - 1 comment

#112 - update cran comments

Pull Request - State: closed - Opened by sinarueeger over 4 years ago - 7 comments

#111 - updating news

Pull Request - State: closed - Opened by sinarueeger over 4 years ago - 1 comment

#110 - update COC

Pull Request - State: closed - Opened by sinarueeger over 4 years ago - 1 comment

#109 - update to correct year

Pull Request - State: closed - Opened by sinarueeger over 4 years ago - 1 comment

#108 - updating codemeta for issue #102

Pull Request - State: closed - Opened by sinarueeger over 4 years ago - 1 comment

#107 - updated revdep folder readme.md after running revdepcheck

Pull Request - State: closed - Opened by jooolia over 4 years ago - 3 comments

#106 - All opensnp functions fail

Issue - State: closed - Opened by sinarueeger over 4 years ago - 1 comment

#105 - Updating NEWS

Pull Request - State: closed - Opened by sinarueeger over 4 years ago - 4 comments

#104 - Rename ncbi_snp_query_api() > ncbi_snp_query()

Pull Request - State: closed - Opened by sinarueeger over 4 years ago - 3 comments

#103 - New Appveyor failure on branch dev

Issue - State: closed - Opened by jooolia over 4 years ago - 4 comments

#102 - New version > CRAN take two

Issue - State: closed - Opened by jooolia over 4 years ago - 11 comments
Labels: Release

#101 - Removing obsolete functions

Pull Request - State: closed - Opened by sinarueeger over 4 years ago - 2 comments

#100 - Adding environment option USE_RTOOLS to appveyor to make it pass.

Pull Request - State: closed - Opened by jooolia over 4 years ago - 1 comment

#99 - Revert "Integrating new NCBI format"

Pull Request - State: closed - Opened by sinarueeger over 4 years ago - 2 comments

#98 - In ncbi_snp_query_api() convert from RJSONIO to rjsonlite

Issue - State: closed - Opened by jooolia over 4 years ago

#97 - Add support for different frequency databases to ncbi_snp_query_api()

Issue - State: closed - Opened by jooolia over 4 years ago - 7 comments
Labels: Feature

#96 - Add message to ncbi_snp_query_api() if user submits large number of rsids.

Issue - State: open - Opened by jooolia over 4 years ago
Labels: Feature

#95 - Add support for reporting the hg19/37 position (if available) in ncbi_snp_query_api()

Issue - State: open - Opened by jooolia over 4 years ago - 7 comments
Labels: Feature

#94 - Are the variant representations reported by rnsps the same as reported by NCBI?

Issue - State: open - Opened by jooolia over 4 years ago - 2 comments

#93 - Report clinical significance using the ncbi refsnp api function

Issue - State: open - Opened by jooolia over 4 years ago
Labels: Feature

#92 - T86 add support ncbi refsnp api

Pull Request - State: closed - Opened by jooolia over 4 years ago - 7 comments

#91 - give title to vignette. fixes #90.

Pull Request - State: closed - Opened by jooolia almost 5 years ago - 2 comments

#90 - Give the vignette a title

Issue - State: closed - Opened by jeroen almost 5 years ago - 2 comments

#89 - ncbi_snp_query returns empty result for any SNP

Issue - State: closed - Opened by LanyingWei about 5 years ago - 6 comments

#88 - Integrating new NCBI format

Pull Request - State: closed - Opened by sinarueeger about 5 years ago - 7 comments

#87 - Adding new tests for ncbi_snp_query()

Pull Request - State: closed - Opened by sinarueeger over 5 years ago - 1 comment

#86 - All NCBI functions failing

Issue - State: closed - Opened by sinarueeger over 5 years ago - 5 comments

#85 - T71 sugg sckott

Pull Request - State: closed - Opened by sinarueeger over 5 years ago - 2 comments

#84 - T71 news

Pull Request - State: closed - Opened by sinarueeger over 5 years ago - 1 comment

#83 - Added the use of Rtools to appveyor yaml

Pull Request - State: closed - Opened by jooolia over 5 years ago - 5 comments

#82 - T71 revdep jag appveyor

Pull Request - State: closed - Opened by sinarueeger over 5 years ago - 1 comment

#81 - Dependency mime failing in windows CI checks

Issue - State: closed - Opened by jooolia over 5 years ago - 1 comment

#80 - Fixtypo orcid try nbr 2

Pull Request - State: closed - Opened by sinarueeger over 5 years ago - 4 comments

#79 - T71 revdep updated folder

Pull Request - State: closed - Opened by jooolia over 5 years ago - 10 comments

#75 - Add more info about creating NCBI API key

Issue - State: closed - Opened by jooolia over 5 years ago - 2 comments
Labels: Feature

GitHub / ropensci/rsnps issues and pull requests