Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / ropensci/rotl issues and pull requests
#147 - SSL Certificate Issue
Issue -
State: closed - Opened by tomjwebb about 1 month ago
- 5 comments
#146 - [CRAN] package documentation issue
Issue -
State: open - Opened by fmichonneau about 1 year ago
#145 - New bulk node_info and taxon_info api call options
Issue -
State: open - Opened by snacktavish over 1 year ago
- 2 comments
#144 - tnrs: return match with best score
Pull Request -
State: closed - Opened by fmichonneau over 1 year ago
#143 - `tnrs_match_names` does not return the best match in some cases
Issue -
State: closed - Opened by ajrominger over 1 year ago
- 4 comments
#142 - optimize dependencies
Issue -
State: open - Opened by Adafede about 2 years ago
#141 - SSL certificate problem: certificate has expired
Issue -
State: closed - Opened by noor-albader over 2 years ago
- 1 comment
#140 - HTTP failure to connect to localhost
Issue -
State: closed - Opened by nclaidiere over 2 years ago
- 1 comment
#139 - error with tnrs_match_names names list
Issue -
State: closed - Opened by Anya91 over 2 years ago
#138 - "The requested subtree is too large" -- possible to read in downloaded xml?
Issue -
State: closed - Opened by avephill over 2 years ago
- 2 comments
#137 - update 'nexson_id' to 'ot:treeId'
Pull Request -
State: closed - Opened by snacktavish over 2 years ago
- 1 comment
#136 - studies_find_trees returning NULL match_tree_ids
Issue -
State: closed - Opened by LunaSare over 2 years ago
- 1 comment
#135 - SSL certificate error
Issue -
State: closed - Opened by ddenney1 almost 3 years ago
- 2 comments
#134 - do_approximate_matching= TRUE not working on tnrs_match_names using multiple inputs
Issue -
State: closed - Opened by LunaSare about 3 years ago
- 2 comments
#133 - Linux install
Issue -
State: closed - Opened by jmjech almost 4 years ago
- 2 comments
#132 - Error in tnrs_match_names() for unmatched names
Issue -
State: closed - Opened by FlukeAndFeather almost 4 years ago
- 3 comments
#131 - add doi to citation
Pull Request -
State: closed - Opened by snacktavish about 4 years ago
- 3 comments
#130 - Pr/129
Pull Request -
State: closed - Opened by fmichonneau over 4 years ago
#129 - fix error when a species has no match
Pull Request -
State: closed - Opened by daijiang over 4 years ago
- 1 comment
#128 - Error when a species not matched with `tnrs_match_names()`
Issue -
State: closed - Opened by daijiang over 4 years ago
- 1 comment
#127 - use score from tnrs match names
Issue -
State: closed - Opened by fmichonneau over 4 years ago
#126 - tnrs_match_names bug
Issue -
State: closed - Opened by sckott over 4 years ago
- 8 comments
#125 - Tips not ordered alphabetically for polytomies
Issue -
State: closed - Opened by crodriguez-saltos over 4 years ago
- 2 comments
#124 - print citations to a file
Pull Request -
State: open - Opened by LunaSare over 4 years ago
#123 - Citations doc
Pull Request -
State: closed - Opened by LunaSare almost 5 years ago
- 2 comments
#122 - tol_induced_subtree drops supporting studies information
Issue -
State: open - Opened by LunaSare almost 5 years ago
#121 - Drosophila spelled correctly
Pull Request -
State: closed - Opened by bomeara almost 5 years ago
- 3 comments
#120 - Adding annotation to trees is not possible because of the lack of edge lengths
Issue -
State: closed - Opened by lhgergo about 5 years ago
- 4 comments
#119 - Unable to recognise the tree labels/species name in the phylogenetic tree ??
Issue -
State: open - Opened by santoshe1 over 5 years ago
#118 - rotemplate was transferred
Pull Request -
State: closed - Opened by maelle over 5 years ago
- 2 comments
#117 - tnrs_match_names and tol_induced_subtree only pull 250 species
Issue -
State: closed - Opened by akahrl over 5 years ago
- 5 comments
#116 - exporting file from tol_induced_subtree, label_format = "name" doesn't apply
Issue -
State: closed - Opened by jenna-tb-ekwealor over 5 years ago
- 2 comments
#115 - OTT id 5784010 could not be found
Issue -
State: open - Opened by LunaSare almost 6 years ago
- 2 comments
#114 - Error in rncl(file = file, ...)
Issue -
State: closed - Opened by TarekHattab about 6 years ago
- 2 comments
#113 - Mus isn't a mouse?
Issue -
State: closed - Opened by bomeara about 6 years ago
- 6 comments
#112 - Fix typo
Pull Request -
State: closed - Opened by BioGeek about 6 years ago
#111 - Fix typo
Pull Request -
State: closed - Opened by BioGeek about 6 years ago
#110 - link to taxize book?
Issue -
State: open - Opened by sckott about 6 years ago
- 1 comment
#109 - 502 Proxy Error using tnrs_match_names
Issue -
State: closed - Opened by marknovak over 6 years ago
- 4 comments
#108 - Error: HTTP failure: 400 using "tol_induced_subtree" function
Issue -
State: closed - Opened by Cactusolo over 6 years ago
- 7 comments
#107 - Add ORCIDs to DESCRIPTION
Issue -
State: closed - Opened by fmichonneau over 6 years ago
- 3 comments
#106 - do we need to lowercase the string provided by user in tnrs_match_names?
Issue -
State: open - Opened by fmichonneau over 6 years ago
- 4 comments
#105 - study_doi should be replaced by studyPublicationReference
Issue -
State: open - Opened by bomeara almost 7 years ago
- 1 comment
#104 - Download tree for all species belonging to a large clade?
Issue -
State: closed - Opened by dbarneche almost 7 years ago
- 8 comments
#103 - use json_coordinates for update and inspect
Issue -
State: open - Opened by fmichonneau about 7 years ago
#102 - create bind_rows and rbind methods for match_names objects
Issue -
State: open - Opened by fmichonneau about 7 years ago
#101 - inspect() returns incorrect taxon/row
Issue -
State: open - Opened by marknovak about 7 years ago
- 8 comments
#100 - Added rOpenSci review badge
Pull Request -
State: closed - Opened by karthik about 7 years ago
- 1 comment
#99 - make sure all generics have default method
Issue -
State: open - Opened by fmichonneau over 7 years ago
#98 - Why can't I retrieve the subtree for Lycopodiidae
Issue -
State: open - Opened by rossmounce over 7 years ago
- 11 comments
#97 - Inconsistent limit given for taxonomy_subtree()
Issue -
State: open - Opened by rossmounce over 7 years ago
- 3 comments
#96 - Corrupted error message
Issue -
State: open - Opened by rossmounce over 7 years ago
#95 - fix some typos in the comments / examples
Pull Request -
State: closed - Opened by patperu over 7 years ago
- 4 comments
#94 - use `bibentry` instead of `citEntry` in inst/CITATION
Issue -
State: closed - Opened by fmichonneau over 7 years ago
#93 - fix docs
Pull Request -
State: closed - Opened by fmichonneau almost 8 years ago
#92 - doc: arg tree -> tree_id
Pull Request -
State: closed - Opened by josephwb almost 8 years ago
- 8 comments
#91 - fix doc tree -> tree_id
Pull Request -
State: closed - Opened by josephwb almost 8 years ago
- 3 comments
#90 - get_study_subtree doesn't take tip_label as an argument
Issue -
State: closed - Opened by bomeara almost 8 years ago
- 1 comment
#89 - Subtree not pruning correctly
Issue -
State: closed - Opened by bomeara almost 8 years ago
- 1 comment
#88 - warn users that the output of tnrs_match_names might change through times
Issue -
State: open - Opened by fmichonneau almost 8 years ago
- 1 comment
#87 - update CITATION to include information about the Open Tree
Issue -
State: closed - Opened by fmichonneau about 8 years ago
#86 - tnrs_match_names fuzzy behavior
Issue -
State: closed - Opened by sckott about 8 years ago
- 4 comments
#85 - Returns ellipsis rather than all tree_id
Issue -
State: closed - Opened by bomeara about 8 years ago
- 8 comments
#84 - update FAQ with current behavior when asking for induced_tree of taxa not included in synthetic tree
Issue -
State: closed - Opened by fmichonneau about 8 years ago
- 1 comment
#83 - use jsonvalidate to test object returned by API?
Issue -
State: open - Opened by fmichonneau over 8 years ago
Labels: enhancement
#82 - add citation info
Issue -
State: closed - Opened by fmichonneau over 8 years ago
#81 - NOTE about unstated dependencies w/ R 3.3.0
Issue -
State: closed - Opened by dwinter over 8 years ago
- 4 comments
#80 - Clean up/expand NEWS before release
Issue -
State: closed - Opened by fmichonneau over 8 years ago
#79 - Should the next version released to CRAN be v3.0.0?
Issue -
State: closed - Opened by fmichonneau over 8 years ago
- 3 comments
#78 - Regenerate README before CRAN release
Issue -
State: closed - Opened by fmichonneau over 8 years ago
- 2 comments
#77 - Differentiate `nearest_taxon` from `taxon` for the taxonomic methods associated with `tol_mrca`
Issue -
State: closed - Opened by fmichonneau over 8 years ago
- 6 comments
#76 - upgrade to v3
Pull Request -
State: closed - Opened by fmichonneau over 8 years ago
- 1 comment
#75 - include in tests of tnrs methods taxa with no matches
Issue -
State: closed - Opened by fmichonneau over 8 years ago
#74 - tol_induced_subtree errors with v3
Issue -
State: closed - Opened by dwinter over 8 years ago
- 4 comments
#73 - Bring Tree of Life endpoints up to v3
Issue -
State: closed - Opened by dwinter over 8 years ago
- 1 comment
#72 - .tol_node_info is duplicated
Issue -
State: closed - Opened by fmichonneau over 8 years ago
- 1 comment
#71 - convert study endpoint to v3
Issue -
State: closed - Opened by fmichonneau over 8 years ago
- 1 comment
#70 - convert tnrs endpoint to v3
Issue -
State: closed - Opened by fmichonneau over 8 years ago
- 2 comments
#69 - convert taxonomy endpoint to v3
Issue -
State: closed - Opened by fmichonneau over 8 years ago
- 1 comment
#68 - update synthetic tree endpoint to v3
Issue -
State: closed - Opened by fmichonneau over 8 years ago
- 2 comments
#67 - create function to get help associated with an endpoint
Issue -
State: closed - Opened by fmichonneau over 8 years ago
- 1 comment
#66 - bump version, update NEWS
Pull Request -
State: closed - Opened by fmichonneau over 8 years ago
#65 - Revision
Pull Request -
State: closed - Opened by fmichonneau over 8 years ago
#64 - feedback on opentree v3 API
Issue -
State: closed - Opened by kcranston over 8 years ago
- 3 comments
#63 - New CRAN release
Issue -
State: closed - Opened by dwinter over 8 years ago
- 7 comments
#62 - Tree data( #47)
Pull Request -
State: closed - Opened by dwinter over 8 years ago
- 4 comments
#61 - fix meta-analysis vignette
Issue -
State: closed - Opened by fmichonneau over 8 years ago
- 1 comment
#60 - create functions to interact with collections endpoint
Issue -
State: open - Opened by fmichonneau almost 9 years ago
- 2 comments
Labels: wait for OTL
#59 - add argument `label_format` to `taxonomy_subtree()`
Issue -
State: closed - Opened by fmichonneau almost 9 years ago
- 1 comment
#58 - add argument `include_lineage` to `taxonomy_lica()`
Issue -
State: closed - Opened by fmichonneau almost 9 years ago
- 3 comments
#57 - provide methods to retrieve higher taxonomy
Issue -
State: closed - Opened by fmichonneau almost 9 years ago
#56 - handle better query limits (and figure out what they are)
Issue -
State: closed - Opened by fmichonneau almost 9 years ago
- 4 comments
#55 - Meta analyses eg
Pull Request -
State: closed - Opened by dwinter almost 9 years ago
- 1 comment
#54 - Convert TRUE/FALSE columns to logicals in tnrs_match_names
Issue -
State: closed - Opened by dwinter almost 9 years ago
- 3 comments
#53 - update vignette to document OTT IDs missing form induced tree
Issue -
State: closed - Opened by dwinter about 9 years ago
#52 - Work on #50
Pull Request -
State: closed - Opened by dwinter about 9 years ago
- 4 comments
#51 - studies_find_studies should have a column tree_ids like studies_find_trees does
Issue -
State: closed - Opened by fmichonneau about 9 years ago
#50 - Create strip_ott_ids function
Issue -
State: closed - Opened by fmichonneau about 9 years ago
#49 - Feedback request: new interface for studies_find_studies and studies_find_trees
Issue -
State: closed - Opened by fmichonneau about 9 years ago
- 3 comments
#48 - Bug or feature?
Issue -
State: closed - Opened by fmichonneau about 9 years ago
Labels: wait for OTL