Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / ropensci/rotl issues and pull requests

#147 - SSL Certificate Issue

Issue - State: closed - Opened by tomjwebb about 1 month ago - 5 comments

#146 - [CRAN] package documentation issue

Issue - State: open - Opened by fmichonneau about 1 year ago

#145 - New bulk node_info and taxon_info api call options

Issue - State: open - Opened by snacktavish over 1 year ago - 2 comments

#144 - tnrs: return match with best score

Pull Request - State: closed - Opened by fmichonneau over 1 year ago

#143 - `tnrs_match_names` does not return the best match in some cases

Issue - State: closed - Opened by ajrominger over 1 year ago - 4 comments

#142 - optimize dependencies

Issue - State: open - Opened by Adafede about 2 years ago

#141 - SSL certificate problem: certificate has expired

Issue - State: closed - Opened by noor-albader over 2 years ago - 1 comment

#140 - HTTP failure to connect to localhost

Issue - State: closed - Opened by nclaidiere over 2 years ago - 1 comment

#139 - error with tnrs_match_names names list

Issue - State: closed - Opened by Anya91 over 2 years ago

#138 - "The requested subtree is too large" -- possible to read in downloaded xml?

Issue - State: closed - Opened by avephill over 2 years ago - 2 comments

#137 - update 'nexson_id' to 'ot:treeId'

Pull Request - State: closed - Opened by snacktavish over 2 years ago - 1 comment

#136 - studies_find_trees returning NULL match_tree_ids

Issue - State: closed - Opened by LunaSare over 2 years ago - 1 comment

#135 - SSL certificate error

Issue - State: closed - Opened by ddenney1 almost 3 years ago - 2 comments

#133 - Linux install

Issue - State: closed - Opened by jmjech almost 4 years ago - 2 comments

#132 - Error in tnrs_match_names() for unmatched names

Issue - State: closed - Opened by FlukeAndFeather almost 4 years ago - 3 comments

#131 - add doi to citation

Pull Request - State: closed - Opened by snacktavish about 4 years ago - 3 comments

#130 - Pr/129

Pull Request - State: closed - Opened by fmichonneau over 4 years ago

#129 - fix error when a species has no match

Pull Request - State: closed - Opened by daijiang over 4 years ago - 1 comment

#128 - Error when a species not matched with `tnrs_match_names()`

Issue - State: closed - Opened by daijiang over 4 years ago - 1 comment

#127 - use score from tnrs match names

Issue - State: closed - Opened by fmichonneau over 4 years ago

#126 - tnrs_match_names bug

Issue - State: closed - Opened by sckott over 4 years ago - 8 comments

#125 - Tips not ordered alphabetically for polytomies

Issue - State: closed - Opened by crodriguez-saltos over 4 years ago - 2 comments

#124 - print citations to a file

Pull Request - State: open - Opened by LunaSare over 4 years ago

#123 - Citations doc

Pull Request - State: closed - Opened by LunaSare almost 5 years ago - 2 comments

#122 - tol_induced_subtree drops supporting studies information

Issue - State: open - Opened by LunaSare almost 5 years ago

#121 - Drosophila spelled correctly

Pull Request - State: closed - Opened by bomeara almost 5 years ago - 3 comments

#120 - Adding annotation to trees is not possible because of the lack of edge lengths

Issue - State: closed - Opened by lhgergo about 5 years ago - 4 comments

#118 - rotemplate was transferred

Pull Request - State: closed - Opened by maelle over 5 years ago - 2 comments

#117 - tnrs_match_names and tol_induced_subtree only pull 250 species

Issue - State: closed - Opened by akahrl over 5 years ago - 5 comments

#115 - OTT id 5784010 could not be found

Issue - State: open - Opened by LunaSare almost 6 years ago - 2 comments

#114 - Error in rncl(file = file, ...)

Issue - State: closed - Opened by TarekHattab about 6 years ago - 2 comments

#113 - Mus isn't a mouse?

Issue - State: closed - Opened by bomeara about 6 years ago - 6 comments

#112 - Fix typo

Pull Request - State: closed - Opened by BioGeek about 6 years ago

#111 - Fix typo

Pull Request - State: closed - Opened by BioGeek about 6 years ago

#110 - link to taxize book?

Issue - State: open - Opened by sckott about 6 years ago - 1 comment

#109 - 502 Proxy Error using tnrs_match_names

Issue - State: closed - Opened by marknovak over 6 years ago - 4 comments

#108 - Error: HTTP failure: 400 using "tol_induced_subtree" function

Issue - State: closed - Opened by Cactusolo over 6 years ago - 7 comments

#107 - Add ORCIDs to DESCRIPTION

Issue - State: closed - Opened by fmichonneau over 6 years ago - 3 comments

#106 - do we need to lowercase the string provided by user in tnrs_match_names?

Issue - State: open - Opened by fmichonneau over 6 years ago - 4 comments

#105 - study_doi should be replaced by studyPublicationReference

Issue - State: open - Opened by bomeara almost 7 years ago - 1 comment

#104 - Download tree for all species belonging to a large clade?

Issue - State: closed - Opened by dbarneche almost 7 years ago - 8 comments

#103 - use json_coordinates for update and inspect

Issue - State: open - Opened by fmichonneau about 7 years ago

#101 - inspect() returns incorrect taxon/row

Issue - State: open - Opened by marknovak about 7 years ago - 8 comments

#100 - Added rOpenSci review badge

Pull Request - State: closed - Opened by karthik about 7 years ago - 1 comment

#99 - make sure all generics have default method

Issue - State: open - Opened by fmichonneau over 7 years ago

#98 - Why can't I retrieve the subtree for Lycopodiidae

Issue - State: open - Opened by rossmounce over 7 years ago - 11 comments

#97 - Inconsistent limit given for taxonomy_subtree()

Issue - State: open - Opened by rossmounce over 7 years ago - 3 comments

#96 - Corrupted error message

Issue - State: open - Opened by rossmounce over 7 years ago

#95 - fix some typos in the comments / examples

Pull Request - State: closed - Opened by patperu over 7 years ago - 4 comments

#94 - use `bibentry` instead of `citEntry` in inst/CITATION

Issue - State: closed - Opened by fmichonneau over 7 years ago

#93 - fix docs

Pull Request - State: closed - Opened by fmichonneau almost 8 years ago

#92 - doc: arg tree -> tree_id

Pull Request - State: closed - Opened by josephwb almost 8 years ago - 8 comments

#91 - fix doc tree -> tree_id

Pull Request - State: closed - Opened by josephwb almost 8 years ago - 3 comments

#90 - get_study_subtree doesn't take tip_label as an argument

Issue - State: closed - Opened by bomeara almost 8 years ago - 1 comment

#89 - Subtree not pruning correctly

Issue - State: closed - Opened by bomeara almost 8 years ago - 1 comment

#88 - warn users that the output of tnrs_match_names might change through times

Issue - State: open - Opened by fmichonneau almost 8 years ago - 1 comment

#87 - update CITATION to include information about the Open Tree

Issue - State: closed - Opened by fmichonneau about 8 years ago

#86 - tnrs_match_names fuzzy behavior

Issue - State: closed - Opened by sckott about 8 years ago - 4 comments

#85 - Returns ellipsis rather than all tree_id

Issue - State: closed - Opened by bomeara about 8 years ago - 8 comments

#83 - use jsonvalidate to test object returned by API?

Issue - State: open - Opened by fmichonneau over 8 years ago
Labels: enhancement

#82 - add citation info

Issue - State: closed - Opened by fmichonneau over 8 years ago

#81 - NOTE about unstated dependencies w/ R 3.3.0

Issue - State: closed - Opened by dwinter over 8 years ago - 4 comments

#80 - Clean up/expand NEWS before release

Issue - State: closed - Opened by fmichonneau over 8 years ago

#79 - Should the next version released to CRAN be v3.0.0?

Issue - State: closed - Opened by fmichonneau over 8 years ago - 3 comments

#78 - Regenerate README before CRAN release

Issue - State: closed - Opened by fmichonneau over 8 years ago - 2 comments

#76 - upgrade to v3

Pull Request - State: closed - Opened by fmichonneau over 8 years ago - 1 comment

#75 - include in tests of tnrs methods taxa with no matches

Issue - State: closed - Opened by fmichonneau over 8 years ago

#74 - tol_induced_subtree errors with v3

Issue - State: closed - Opened by dwinter over 8 years ago - 4 comments

#73 - Bring Tree of Life endpoints up to v3

Issue - State: closed - Opened by dwinter over 8 years ago - 1 comment

#72 - .tol_node_info is duplicated

Issue - State: closed - Opened by fmichonneau over 8 years ago - 1 comment

#71 - convert study endpoint to v3

Issue - State: closed - Opened by fmichonneau over 8 years ago - 1 comment

#70 - convert tnrs endpoint to v3

Issue - State: closed - Opened by fmichonneau over 8 years ago - 2 comments

#69 - convert taxonomy endpoint to v3

Issue - State: closed - Opened by fmichonneau over 8 years ago - 1 comment

#68 - update synthetic tree endpoint to v3

Issue - State: closed - Opened by fmichonneau over 8 years ago - 2 comments

#67 - create function to get help associated with an endpoint

Issue - State: closed - Opened by fmichonneau over 8 years ago - 1 comment

#66 - bump version, update NEWS

Pull Request - State: closed - Opened by fmichonneau over 8 years ago

#65 - Revision

Pull Request - State: closed - Opened by fmichonneau over 8 years ago

#64 - feedback on opentree v3 API

Issue - State: closed - Opened by kcranston over 8 years ago - 3 comments

#63 - New CRAN release

Issue - State: closed - Opened by dwinter over 8 years ago - 7 comments

#62 - Tree data( #47)

Pull Request - State: closed - Opened by dwinter over 8 years ago - 4 comments

#61 - fix meta-analysis vignette

Issue - State: closed - Opened by fmichonneau over 8 years ago - 1 comment

#60 - create functions to interact with collections endpoint

Issue - State: open - Opened by fmichonneau almost 9 years ago - 2 comments
Labels: wait for OTL

#59 - add argument `label_format` to `taxonomy_subtree()`

Issue - State: closed - Opened by fmichonneau almost 9 years ago - 1 comment

#58 - add argument `include_lineage` to `taxonomy_lica()`

Issue - State: closed - Opened by fmichonneau almost 9 years ago - 3 comments

#57 - provide methods to retrieve higher taxonomy

Issue - State: closed - Opened by fmichonneau almost 9 years ago

#56 - handle better query limits (and figure out what they are)

Issue - State: closed - Opened by fmichonneau almost 9 years ago - 4 comments

#55 - Meta analyses eg

Pull Request - State: closed - Opened by dwinter almost 9 years ago - 1 comment

#54 - Convert TRUE/FALSE columns to logicals in tnrs_match_names

Issue - State: closed - Opened by dwinter almost 9 years ago - 3 comments

#53 - update vignette to document OTT IDs missing form induced tree

Issue - State: closed - Opened by dwinter about 9 years ago

#52 - Work on #50

Pull Request - State: closed - Opened by dwinter about 9 years ago - 4 comments

#50 - Create strip_ott_ids function

Issue - State: closed - Opened by fmichonneau about 9 years ago

#49 - Feedback request: new interface for studies_find_studies and studies_find_trees

Issue - State: closed - Opened by fmichonneau about 9 years ago - 3 comments

#48 - Bug or feature?

Issue - State: closed - Opened by fmichonneau about 9 years ago
Labels: wait for OTL