Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / ropensci/restez issues and pull requests

#63 - with_mock() is going away

Issue - State: open - Opened by hadley 28 days ago

#61 - add error trapping to flatfile_read()

Pull Request - State: closed - Opened by btupper 10 months ago - 1 comment

#60 - Error in `db_create()`: result would exceed 2^31-1 bytes

Issue - State: closed - Opened by btupper 10 months ago - 1 comment

#59 - Release restez 2.1.4

Issue - State: closed - Opened by joelnitta over 1 year ago

#58 - Export print.status()

Pull Request - State: closed - Opened by joelnitta over 1 year ago

#56 - Joelnitta/issue55

Pull Request - State: closed - Opened by joelnitta over 1 year ago

#55 - restez and duckdb 0.9.0

Issue - State: closed - Opened by krlmlr over 1 year ago - 2 comments

#54 - `gb_df_generate` can't be found

Issue - State: closed - Opened by cbird808 over 1 year ago - 1 comment

#53 - Rebuild vignettes

Pull Request - State: closed - Opened by joelnitta over 1 year ago

#52 - Feature request: Add argument to download data by group name

Issue - State: open - Opened by joelnitta over 1 year ago
Labels: enhancement

#51 - Fix bug where conversion to integer was failing

Pull Request - State: closed - Opened by joelnitta over 1 year ago

#50 - vignette error

Issue - State: closed - Opened by maelle over 1 year ago - 2 comments

#49 - db_download issue

Issue - State: closed - Opened by Maxim-Karpov over 1 year ago - 1 comment

#48 - Issue47

Pull Request - State: closed - Opened by joelnitta about 2 years ago

#47 - db_download() broken by GenBank release 252

Issue - State: closed - Opened by maelle over 2 years ago - 5 comments

#46 - Fix incorrect warning in db_download()

Pull Request - State: closed - Opened by joelnitta over 2 years ago

#45 - warning in db_download() is wrong

Issue - State: closed - Opened by joelnitta over 2 years ago

#44 - Output DNA sequences in ape format (dna.bin)

Pull Request - State: closed - Opened by joelnitta over 2 years ago

#43 - Add ncbi_acc_get()

Pull Request - State: closed - Opened by joelnitta over 2 years ago

#42 - Joelnitta/issue36

Pull Request - State: closed - Opened by joelnitta over 2 years ago

#41 - Joelnitta/issue39

Pull Request - State: closed - Opened by joelnitta over 2 years ago

#40 - Calculate db size using fs::fs_bytes()

Pull Request - State: closed - Opened by joelnitta over 2 years ago

#39 - Update documentation mentioning monetDB

Issue - State: closed - Opened by joelnitta over 2 years ago

#38 - Feature request: output DNA sequences in ape format (dna.bin)

Issue - State: closed - Opened by joelnitta over 2 years ago
Labels: enhancement

#37 - Feature request: easier querying of GenBank accession numbers

Issue - State: closed - Opened by joelnitta over 2 years ago
Labels: enhancement

#36 - Feature request: persistent downloads

Issue - State: closed - Opened by joelnitta over 2 years ago
Labels: enhancement

#35 - joelnitta/issue33

Pull Request - State: closed - Opened by joelnitta over 2 years ago

#34 - Fix pkgdown ref index build

Pull Request - State: closed - Opened by maelle over 2 years ago - 1 comment

#33 - "Database is garbage-collected" warning appearing very often

Issue - State: closed - Opened by joelnitta over 2 years ago

#31 - Joelnitta/issue18

Pull Request - State: closed - Opened by joelnitta over 2 years ago

#30 - Joelnitta/bump

Pull Request - State: closed - Opened by joelnitta over 2 years ago

#29 - Joelnitta/issue25

Pull Request - State: closed - Opened by joelnitta over 2 years ago

#28 - Update documentation

Issue - State: closed - Opened by joelnitta over 2 years ago

#27 - Joelnitta/issue25

Pull Request - State: closed - Opened by joelnitta over 2 years ago - 1 comment

#26 - MonetDBLite not available

Issue - State: closed - Opened by maelle over 2 years ago - 4 comments

#24 - Fix extract_clean_sequence()

Pull Request - State: closed - Opened by joelnitta over 2 years ago

#23 - New Maintainer Wanted

Issue - State: closed - Opened by maelle almost 3 years ago - 5 comments

#22 - Allow selection of GenBank release?

Issue - State: open - Opened by joelnitta almost 3 years ago - 1 comment

#21 - db_download() error

Issue - State: closed - Opened by chow42 over 3 years ago

#20 - db_create() / Error reading from the connection

Issue - State: open - Opened by bioxenia almost 4 years ago - 4 comments

#19 - db_download error!

Issue - State: closed - Opened by bioxenia about 4 years ago - 3 comments

#18 - archived on CRAN

Issue - State: closed - Opened by sckott about 5 years ago - 3 comments

#17 - getting spliced coding sequences instead of the gene sequence

Issue - State: open - Opened by terrimporter about 5 years ago - 3 comments
Labels: enhancement

#16 - Problem with docs

Issue - State: closed - Opened by jeroen over 5 years ago - 10 comments

#15 - Could not resolve host: www.google.com

Issue - State: closed - Opened by RinLinux about 6 years ago - 2 comments
Labels: bug

#14 - db_create bug at the 22nd file

Issue - State: closed - Opened by JanPerret about 6 years ago - 15 comments
Labels: bug

#13 - Differing gb_record_get() and entrez_fetch()

Issue - State: closed - Opened by DomBennett over 6 years ago
Labels: review

#12 - Revise README Graphic

Issue - State: closed - Opened by DomBennett over 6 years ago
Labels: review

#11 - Harmonize vignettes

Issue - State: closed - Opened by DomBennett over 6 years ago
Labels: enhancement, review

#10 - Performance Issues With Querying Large Databases

Issue - State: closed - Opened by DomBennett over 6 years ago
Labels: enhancement, review

#9 - Documentation improvements

Issue - State: closed - Opened by DomBennett over 6 years ago
Labels: enhancement, review

#8 - Handle different accession versions

Issue - State: open - Opened by DomBennett almost 7 years ago
Labels: enhancement

#7 - Update readme

Issue - State: closed - Opened by DomBennett almost 7 years ago
Labels: enhancement

#6 - Use cat_line

Issue - State: closed - Opened by DomBennett almost 7 years ago - 3 comments
Labels: enhancement

#5 - Create stats tools

Issue - State: closed - Opened by DomBennett almost 7 years ago - 1 comment
Labels: enhancement

#4 - Use taxizeDB and FTP downloads to create taxonomic database

Issue - State: open - Opened by DomBennett almost 7 years ago
Labels: enhancement

#3 - Implement wrapper for rentrez::entrez_search

Issue - State: open - Opened by DomBennett almost 7 years ago
Labels: enhancement

#2 - Create wrapper for rentrez::entrez_fetch

Issue - State: closed - Opened by DomBennett almost 7 years ago
Labels: enhancement

#1 - Implement sql database

Issue - State: closed - Opened by DomBennett almost 7 years ago
Labels: enhancement