Ecosyste.ms: Issues

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GitHub / ropensci/dbparser issues and pull requests

#171 - docs: modernize pkgdown config

Pull Request - State: closed - Opened by maelle 4 months ago

#170 - Complete tutorial

Issue - State: closed - Opened by miguecass 6 months ago - 1 comment
Labels: question

#169 - Create r.yml

Pull Request - State: closed - Opened by MohammedFCIS 7 months ago

#168 - Dev

Pull Request - State: closed - Opened by MohammedFCIS 7 months ago

#167 - Release dbparser 2.0.3

Issue - State: closed - Opened by MohammedFCIS 7 months ago

#166 - - Updated unit tests with latest DrugBank DB info v 5.1.12

Pull Request - State: closed - Opened by MohammedFCIS 7 months ago

#165 - Reactions tibble no info on enzymes that catalyze the reaction

Issue - State: closed - Opened by AnjaConev 8 months ago - 4 comments
Labels: good first issue

#163 - Drug Targets has two "drugbank_id" columns

Issue - State: closed - Opened by MohammedFCIS 9 months ago
Labels: bug

#162 - Merge pull request #160 from ropensci/dev

Pull Request - State: closed - Opened by MohammedFCIS 9 months ago

#161 - Release dbparser 2.0.2

Issue - State: closed - Opened by MohammedFCIS 9 months ago

#160 - Dev

Pull Request - State: closed - Opened by MohammedFCIS 9 months ago

#159 - Drug-target gene, drug-drug indication mapping

Issue - State: closed - Opened by Nobuyuki-Enzan 10 months ago - 8 comments

#158 - Unify and fix keys names

Pull Request - State: closed - Opened by MohammedFCIS about 1 year ago

#157 - Error upon loading Full Database (XML)

Issue - State: closed - Opened by alizat about 1 year ago - 1 comment
Labels: bug, invalid, wontfix

#156 - CRAN note

Issue - State: closed - Opened by MohammedFCIS about 1 year ago - 1 comment
Labels: bug, documentation

#154 - Release dbparser 2.0.1

Issue - State: closed - Opened by MohammedFCIS over 1 year ago

#153 - Fixed CRAN error on some of linux info (#145)

Pull Request - State: closed - Opened by MohammedFCIS over 1 year ago

#152 - Merge pull request #150 from ropensci/develop

Pull Request - State: closed - Opened by MohammedFCIS over 1 year ago

#151 - Fixed package documentation references (#144)

Pull Request - State: closed - Opened by MohammedFCIS over 1 year ago

#150 - Develop

Pull Request - State: closed - Opened by MohammedFCIS over 1 year ago

#149 - fix #146

Pull Request - State: closed - Opened by MohammedFCIS over 1 year ago

#148 - Dvobj output refrences

Pull Request - State: closed - Opened by MohammedFCIS over 1 year ago

#145 - CRAN build has errors on some platforms

Issue - State: closed - Opened by MohammedFCIS over 1 year ago

#144 - Build package documentation failed

Issue - State: closed - Opened by MohammedFCIS over 1 year ago

#143 - Release dbparser 2.0.0

Issue - State: closed - Opened by MohammedFCIS over 1 year ago

#142 - Dvobject

Pull Request - State: closed - Opened by MohammedFCIS over 1 year ago

#141 - Created DrugBank Parser that returns dvobject

Issue - State: closed - Opened by MohammedFCIS almost 2 years ago

#140 - Remove saving CSV options

Issue - State: closed - Opened by MohammedFCIS almost 2 years ago

#139 - - fix #136

Pull Request - State: closed - Opened by MohammedFCIS almost 2 years ago

#138 - Call for co-maintainers :-)

Issue - State: open - Opened by maelle about 2 years ago - 1 comment
Labels: help wanted

#137 - extract drug's corresponding target actions info

Issue - State: closed - Opened by penglimn about 2 years ago - 1 comment

#136 - Fix pkgdown configuration for reference

Issue - State: closed - Opened by maelle about 2 years ago - 11 comments

#135 - download sfd and drugs 3d structure

Issue - State: closed - Opened by MohammedFCIS about 3 years ago
Labels: wontfix

#134 - Submit to CRAN checklist

Issue - State: closed - Opened by MohammedFCIS about 3 years ago

#133 - Update package dependency

Issue - State: closed - Opened by MohammedFCIS about 3 years ago

#132 - Update documentation and vigeneetes for v2.0

Issue - State: closed - Opened by MohammedFCIS about 3 years ago

#131 - Update unit tests for v 2.0

Issue - State: closed - Opened by MohammedFCIS about 3 years ago

#130 - Extracting drugs and related elements based on given drugs ids (search by drug_id)

Issue - State: closed - Opened by MohammedFCIS over 3 years ago
Labels: enhancement

#129 - remove RMariaDB as a dependency

Issue - State: closed - Opened by MohammedFCIS over 3 years ago - 4 comments

#128 - Add target actions

Issue - State: closed - Opened by sscien over 3 years ago - 4 comments
Labels: enhancement

#127 - Documentation Error

Issue - State: closed - Opened by dsasson49 almost 4 years ago - 1 comment
Labels: documentation

#125 - Use travis new settings

Issue - State: closed - Opened by MohammedFCIS about 4 years ago

#124 - Can I get 'SMILES' structure from 'dbparser'

Issue - State: closed - Opened by mostafiz67 about 4 years ago - 8 comments
Labels: question

#123 - Error: 'get_xml_db_rows' is not an exported object from 'namespace:dbparser'

Issue - State: closed - Opened by mostafiz67 about 4 years ago - 4 comments
Labels: question

#122 - Use dittodb package for db testing

Issue - State: closed - Opened by MohammedFCIS about 4 years ago

#121 - Error when running drug classification parser

Issue - State: closed - Opened by lamnvcnsh about 4 years ago - 9 comments
Labels: help wanted

#120 - Error: Argument 7 is a list, must contain atomic vectors

Issue - State: closed - Opened by JustinGibbons about 4 years ago - 2 comments
Labels: not reproducible

#119 - Installation error dbparser

Issue - State: closed - Opened by kcmtest over 4 years ago - 6 comments

#118 - Create generic parsers after drugbank structure

Pull Request - State: closed - Opened by MohammedFCIS over 4 years ago

#117 - prepare for v1.2.0 release

Issue - State: closed - Opened by MohammedFCIS over 4 years ago
Labels: release

#116 - How to see what is read by read_drugbank_xml_db

Issue - State: closed - Opened by iDemirsoy over 4 years ago - 1 comment
Labels: question

#115 - Create generic parsers after drugbank structure

Pull Request - State: closed - Opened by MohammedFCIS over 4 years ago

#114 - Update drug_element_options method to reflect new structure

Issue - State: closed - Opened by MohammedFCIS over 4 years ago - 1 comment
Labels: bug

#113 - Refactor parsers to r6

Pull Request - State: closed - Opened by MohammedFCIS over 4 years ago

#112 - 1.1.3 issues

Pull Request - State: closed - Opened by MohammedFCIS over 4 years ago

#111 - Unify and fix keys names

Issue - State: closed - Opened by MohammedFCIS over 4 years ago
Labels: enhancement

#110 - New Parsers organized After Drugbank categorization

Issue - State: closed - Opened by MohammedFCIS over 4 years ago - 1 comment
Labels: enhancement

#109 - Saved csvs needs to be in ASCII

Issue - State: closed - Opened by MohammedFCIS over 4 years ago

#108 - Missing Elements from Drug Products

Issue - State: closed - Opened by MohammedFCIS over 4 years ago - 1 comment
Labels: wontfix

#107 - Missing Elements from Salts

Issue - State: closed - Opened by MohammedFCIS over 4 years ago - 1 comment
Labels: wontfix

#106 - Fix Drug Reactions Features

Issue - State: closed - Opened by MohammedFCIS over 4 years ago - 1 comment
Labels: wontfix

#105 - Missing Elements from Mixture

Issue - State: closed - Opened by MohammedFCIS over 4 years ago - 1 comment
Labels: wontfix

#104 - Missing elements from Manufacturer

Issue - State: closed - Opened by MohammedFCIS over 4 years ago
Labels: bug

#103 - Refactor parsers to extract same structure

Issue - State: closed - Opened by MohammedFCIS over 4 years ago
Labels: enhancement

#102 - Review Enzyme tibbles structure based on Drugbank documentation

Issue - State: closed - Opened by MohammedFCIS over 4 years ago
Labels: wontfix

#101 - Consider renaming tibbles after drugbank naming conventions

Issue - State: closed - Opened by MohammedFCIS over 4 years ago
Labels: wontfix

#99 - Separate international_brands from Drugs

Issue - State: closed - Opened by MohammedFCIS over 4 years ago
Labels: enhancement

#98 - Separate Pharmacology data than other Drug data

Issue - State: closed - Opened by MohammedFCIS over 4 years ago
Labels: enhancement

#97 - Missing elements in Drugs

Issue - State: closed - Opened by MohammedFCIS over 4 years ago - 1 comment
Labels: wontfix

#95 - prepare for v1.2.0 release

Issue - State: closed - Opened by MohammedFCIS over 4 years ago

#94 - Prepare 1.1.1 Release

Issue - State: closed - Opened by MohammedFCIS over 4 years ago

#93 - Fix CRAN Notes

Issue - State: closed - Opened by MohammedFCIS over 4 years ago
Labels: bug

#92 - dbparser and upcoming CRAN release of dplyr

Issue - State: closed - Opened by MohammedFCIS over 4 years ago
Labels: dependencies

#91 - Column size issue while importing into SQL Server

Issue - State: closed - Opened by aycomp over 4 years ago - 5 comments
Labels: bug

#90 - Prepare 1.1.0 Release

Issue - State: closed - Opened by MohammedFCIS almost 5 years ago
Labels: release

#89 - Remove Noam Ross as reviewer

Pull Request - State: closed - Opened by noamross almost 5 years ago - 1 comment

#88 - do after joining ropensci settings

Issue - State: closed - Opened by MohammedFCIS almost 5 years ago
Labels: ropensci

#87 - Support database connection as parameter in related db functions

Issue - State: closed - Opened by MohammedFCIS almost 5 years ago
Labels: enhancement, ropensci

#86 - Create hex sticker for the package

Issue - State: closed - Opened by MohammedFCIS almost 5 years ago
Labels: documentation

#85 - Resolve migratter issue

Issue - State: closed - Opened by MohammedFCIS almost 5 years ago

#84 - edits

Pull Request - State: closed - Opened by emmamendelsohn almost 5 years ago - 1 comment

#83 - Question about Experimental Properties

Issue - State: closed - Opened by MohammedFCIS almost 5 years ago - 1 comment
Labels: question

#82 - Package R R help

Issue - State: closed - Opened by MohammedFCIS almost 5 years ago
Labels: documentation, ropensci

#81 - Parsers Enhancements

Issue - State: closed - Opened by MohammedFCIS almost 5 years ago
Labels: enhancement, ropensci

#80 - Dataframes versus tibbles

Issue - State: closed - Opened by MohammedFCIS almost 5 years ago
Labels: enhancement, ropensci

#79 - dbparser tutorial enhancements

Issue - State: closed - Opened by MohammedFCIS almost 5 years ago
Labels: documentation, ropensci

#78 - Database capabilities tutorial

Issue - State: closed - Opened by MohammedFCIS almost 5 years ago
Labels: documentation, ropensci

#71 - Add package citation

Issue - State: closed - Opened by MohammedFCIS about 5 years ago

#69 - Improve package documentation

Issue - State: closed - Opened by MohammedFCIS about 5 years ago - 1 comment

#68 - Implement @family tag to group related functions

Issue - State: closed - Opened by MohammedFCIS about 5 years ago

#67 - Complete code coverage to 100%

Issue - State: open - Opened by MohammedFCIS about 5 years ago
Labels: enhancement

#66 - Fix goodpractice reported issues

Issue - State: closed - Opened by MohammedFCIS about 5 years ago

#65 - Implement all bestpractices criteria

Issue - State: closed - Opened by MohammedFCIS about 5 years ago
Labels: enhancement