ropensci/bold issues and pull requests

#100 - fixed anonymous functions syntaxe

Pull Request - State: closed - Opened by salix-d over 1 year ago

#99 - Failing installing bold package

Issue - State: closed - Opened by Natacha66 over 1 year ago - 6 comments

#98 - fix b_get_db

Pull Request - State: closed - Opened by salix-d over 1 year ago

#97 - Can't manually specify "COX1" as database

Issue - State: closed - Opened by ryandkuster over 1 year ago - 1 comment

#96 - fix for global variables note

Pull Request - State: closed - Opened by salix-d almost 2 years ago

#95 - Updating for cran submit

Pull Request - State: closed - Opened by salix-d almost 2 years ago

#94 - Updating for cran submit

Pull Request - State: closed - Opened by salix-d almost 2 years ago

#93 - Maintenance & updates

Pull Request - State: closed - Opened by salix-d almost 2 years ago

#92 - Maintenance & updates

Pull Request - State: closed - Opened by salix-d almost 2 years ago

#91 - change maintainer on cran

Issue - State: closed - Opened by sckott over 2 years ago - 1 comment

#90 - bold_seq() does not return all COI-5P sequences for genus Homo and species Homo sapiens

Issue - State: closed - Opened by jphill01 over 2 years ago - 4 comments

#89 - Add Salix as maintainer

Issue - State: closed - Opened by maelle over 2 years ago - 3 comments

#88 - Small fix for bold_seqspec

Pull Request - State: closed - Opened by cjfields almost 3 years ago - 1 comment

#87 - Odd EOF warning with bold_seqspec

Issue - State: closed - Opened by cjfields almost 3 years ago - 5 comments

#86 - Changed encoding function in bold_seqspec

Pull Request - State: closed - Opened by salix-d almost 3 years ago

#85 - Discrepancies between Taxonomy API and Public API

Issue - State: open - Opened by salix-d almost 3 years ago - 2 comments
Labels: enhancement, API-related

#84 - Getting "HTTP 500: Internal Server Error - Server got itself in trouble" when taxon names have single quotes in them

Issue - State: closed - Opened by salix-d almost 3 years ago - 2 comments
Labels: API-related

#83 - Typo in dataTypes 'depository' prevents fetching related data

Issue - State: closed - Opened by salix-d almost 3 years ago - 2 comments
Labels: API-related

#82 - Unable to download data set for Chironomidae

Issue - State: open - Opened by tadeu95 almost 3 years ago - 1 comment
Labels: enhancement

#81 - Problem with UTF-8 encoding

Issue - State: closed - Opened by chleeb almost 3 years ago - 3 comments
Labels: bug

#80 - Fixes to output of bold_seq() and fasta_split()

Pull Request - State: closed - Opened by salix-d over 3 years ago - 1 comment

#79 - Error in output of bold_seq()

Issue - State: closed - Opened by salix-d over 3 years ago - 2 comments
Labels: bug

#77 - vignette deps - email from cran

Issue - State: closed - Opened by sckott almost 4 years ago

#76 - bold_seqspec() times out for small result set

Issue - State: closed - Opened by pieterprovoost almost 4 years ago - 3 comments
Labels: enhancement

#75 - bold_seqspec ouput contains different vector types between nested lists

Issue - State: closed - Opened by bbvdhoorn over 4 years ago - 4 comments

#74 - I'm getting the Error: Internal Server Error (HTTP 500) for a small chunk of species names

Issue - State: closed - Opened by tadeu95 over 4 years ago - 11 comments
Labels: API-related

#73 - failing test on cran

Issue - State: closed - Opened by sckott over 4 years ago

#72 - BOLD servers returned an error

Issue - State: closed - Opened by Anto007 over 4 years ago - 7 comments

#71 - fix bold_seqspec warning about encoding

Issue - State: closed - Opened by sckott almost 5 years ago

#70 - update base url to https

Issue - State: closed - Opened by sckott almost 5 years ago

#69 - curl error timeout was reached today (3/16/2020)

Issue - State: closed - Opened by lixiaopi1985 almost 5 years ago - 10 comments

#68 - bold_tax_id returns timeout error after hundreds to thousands of calls

Issue - State: closed - Opened by cbird808 over 5 years ago - 4 comments

#67 - 'taxon' argument to bold_seqspec()

Issue - State: closed - Opened by jphill01 over 5 years ago - 6 comments
Labels: question

#66 - The bold_seqspec function is returning a weird data frame with only 1 variable and 7 occurrences

Issue - State: closed - Opened by tadeu95 over 5 years ago - 4 comments

#65 - Guidelines to install `sangerseqR` with R3.6.0 in the README file

Issue - State: closed - Opened by KevCaz over 5 years ago - 1 comment

#64 - allow curl options in bold_identify_parents

Issue - State: closed - Opened by sckott over 5 years ago

#63 - user request bold_identify: include both the query and the match as distinct fields in the output

Issue - State: closed - Opened by sckott almost 6 years ago

#62 - issue with `bold_identify`

Issue - State: closed - Opened by devonorourke almost 6 years ago - 15 comments
Labels: bug

#61 - long vectors, round 2

Issue - State: closed - Opened by devonorourke almost 6 years ago - 3 comments

#60 - a rare case of a missing Insect Order

Issue - State: closed - Opened by devonorourke almost 6 years ago - 6 comments

#59 - `marker_code` or `markercode`... getting the "marker = ..." to function as expected

Issue - State: closed - Opened by devonorourke almost 6 years ago - 5 comments

#58 - add more tests

Issue - State: closed - Opened by sckott about 6 years ago

#57 - _R_CHECK_LENGTH_1_LOGIC2_ R-devel error

Issue - State: closed - Opened by sckott about 6 years ago - 2 comments
Labels: bug

#56 - vcr done

Pull Request - State: closed - Opened by sckott over 6 years ago

#55 - vcr-ify tests

Issue - State: closed - Opened by sckott over 6 years ago

#54 - bold_seq: trim off returns

Issue - State: closed - Opened by sckott over 6 years ago

#53 - bold_seq: error well when BOLD server times out

Issue - State: closed - Opened by sckott over 6 years ago

#52 - Error in bold_seq (str_split: subscript out of bounds)

Issue - State: closed - Opened by bastianegeter over 6 years ago - 11 comments
Labels: bug

#51 - link to taxize book in readme/vignette for taxonomic cenetered use cases

Issue - State: closed - Opened by sckott over 6 years ago - 1 comment

#50 - dual set of parents with genus Ormosia

Issue - State: closed - Opened by dougwyu about 7 years ago - 14 comments

#49 - bold_seqspec function gives a mixed set of markers when using marker argument

Issue - State: closed - Opened by LunaSare over 7 years ago - 3 comments

#48 - updated description and generated codemeta file

Pull Request - State: closed - Opened by graceli8 over 7 years ago - 10 comments

#47 - bold_specimens returns no records with format="tsv" for taxa with large numbers of records

Issue - State: closed - Opened by griffinp over 7 years ago - 3 comments
Labels: bug

#46 - bold_specimens returning poorly formatted data.frame with option format="tsv"

Issue - State: closed - Opened by griffinp over 7 years ago - 2 comments
Labels: bug

#45 - updated README.Rmd

Pull Request - State: closed - Opened by diana-ly over 7 years ago - 1 comment

#44 - network error

Issue - State: closed - Opened by dougwyu almost 8 years ago - 2 comments

#43 - Added a description of BOLD and this package's main function.

Pull Request - State: closed - Opened by katieroserice almost 8 years ago - 2 comments

#42 - replace httr with crul

Issue - State: closed - Opened by sckott almost 8 years ago

#41 - bug in bold_identify_parents?

Issue - State: closed - Opened by VascoElbrecht about 8 years ago - 5 comments
Labels: bug

#40 - help files aren't available (0.4.0)

Issue - State: closed - Opened by dougwyu about 8 years ago - 2 comments

#39 - Remove methods/stats/utils imports and namespace those calls

Issue - State: closed - Opened by sckott about 8 years ago
Labels: Beginner

#38 - Add user seqID to bold_identify results

Issue - State: closed - Opened by tdivoll about 8 years ago - 5 comments

#37 - Database description switcheroo in bold_identify documentation

Issue - State: closed - Opened by dougwyu about 8 years ago - 2 comments

#36 - Add parentnames to output of bold_identify()

Issue - State: closed - Opened by dougwyu about 8 years ago - 10 comments

#35 - via email, user reports bug in bold_identify

Issue - State: closed - Opened by sckott over 8 years ago - 1 comment

#34 - private data API

Issue - State: closed - Opened by sckott over 8 years ago - 1 comment
Labels: later

#33 - replace xml2::xml_find_one with xml2::xml_find_first

Issue - State: closed - Opened by sckott over 8 years ago

#32 - fix case when response contains empty list

Pull Request - State: closed - Opened by fmichonneau over 8 years ago - 5 comments

#31 - dependencies not available

Issue - State: closed - Opened by vanessamata over 8 years ago - 3 comments

#30 - New v4 beta APIs

Issue - State: closed - Opened by sckott almost 9 years ago - 1 comment

#29 - long vectors not supported yet?

Issue - State: closed - Opened by devonorourke almost 9 years ago - 12 comments

#28 - add more tests

Issue - State: closed - Opened by sckott almost 9 years ago

#27 - bug in internal parser

Issue - State: closed - Opened by sckott almost 9 years ago - 1 comment
Labels: bug

#26 - switch XML to xml2

Issue - State: closed - Opened by sckott almost 9 years ago

#25 - Markers option not working

Issue - State: closed - Opened by boopsboops almost 9 years ago - 3 comments
Labels: bug

#24 - Graceful failure for lists of taxa

Issue - State: closed - Opened by boopsboops almost 9 years ago - 4 comments
Labels: bug

#23 - See if can fix can't install sangserseq pkg from bioconductor

Issue - State: closed - Opened by sckott over 9 years ago - 1 comment

#22 - Import all non-base R fxns

Issue - State: closed - Opened by sckott over 9 years ago - 1 comment

#21 - bold_tax_name Error in CRAN version

Issue - State: closed - Opened by nylander almost 10 years ago - 3 comments

#20 - bioc package isn't installing right, appveyor failing

Issue - State: closed - Opened by sckott almost 10 years ago - 2 comments

#19 - Fungi/plant identification APIs

Issue - State: closed - Opened by sckott about 10 years ago - 3 comments

#18 - `bold_tax_id()` throws an error in some cases

Issue - State: closed - Opened by sckott over 10 years ago
Labels: bug