Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / ropensci/RNeXML issues and pull requests
#259 - Dependency `XML` requires R>=4.0
Issue -
State: open - Opened by hlapp 8 months ago
- 2 comments
#258 - `env_unlock()` will be removed from rlang
Issue -
State: open - Opened by lionel- 10 months ago
- 5 comments
#257 - nexml.org is down, causing tests to fail
Issue -
State: closed - Opened by cboettig about 2 years ago
- 15 comments
#256 - update CI to v2
Pull Request -
State: closed - Opened by cboettig about 2 years ago
#255 - Fixes test failure in prospective dplyr 1.1.x
Pull Request -
State: closed - Opened by hlapp about 2 years ago
#254 - Compatibility with dplyr 1.1.0
Issue -
State: closed - Opened by lionel- about 2 years ago
- 6 comments
#253 - Replaces invocations of dplyr deprecated funcs with supported
Pull Request -
State: closed - Opened by hlapp over 2 years ago
- 4 comments
#252 - gh-actions check full
Pull Request -
State: closed - Opened by cboettig about 3 years ago
- 1 comment
#251 - Add RNeXML_ prefix to tree (and other) classes
Issue -
State: closed - Opened by krlmlr about 3 years ago
- 13 comments
#250 - Warning message: select_() is deprecated as of dplyr 0.7.0
Issue -
State: closed - Opened by wdahdul about 4 years ago
#249 - tests fail with new dplyr
Issue -
State: closed - Opened by cboettig over 4 years ago
- 3 comments
#248 - Fix for dplyr 1.0.0
Pull Request -
State: closed - Opened by hadley almost 5 years ago
- 1 comment
#247 - Message from CRAN
Issue -
State: closed - Opened by cboettig almost 5 years ago
- 5 comments
#246 - Explicitly defines column as factor to fix #245
Pull Request -
State: closed - Opened by hlapp almost 5 years ago
#245 - breaking change introduced in R 4.0.0
Issue -
State: closed - Opened by cboettig almost 5 years ago
- 1 comment
#244 - Add official docs url to description
Pull Request -
State: closed - Opened by jeroen over 5 years ago
- 1 comment
#243 - Ability to drop objects from nexml object
Issue -
State: open - Opened by hlapp over 5 years ago
#242 - get_characters() returns columns in different ordering than the list of char objects
Issue -
State: open - Opened by hlapp over 5 years ago
- 1 comment
#241 - New release with new summary() etc
Issue -
State: closed - Opened by hlapp over 5 years ago
- 13 comments
Labels: question
#240 - dplyr methods select_ and mutate_ are deprecated
Issue -
State: closed - Opened by hlapp over 5 years ago
- 2 comments
#239 - Adding characters fails for some matrices
Issue -
State: open - Opened by hlapp over 5 years ago
Labels: bug
#238 - Makes various tests more robust, and uses symbolic address for nexml.org
Pull Request -
State: closed - Opened by hlapp over 5 years ago
- 1 comment
#237 - Provides a real summary() and improved pretty-print
Pull Request -
State: closed - Opened by hlapp over 5 years ago
- 2 comments
#236 - Makes character(0) metadata value behave as empty string
Pull Request -
State: closed - Opened by hlapp over 5 years ago
#235 - Fixes detection of having to split matrix by class
Pull Request -
State: closed - Opened by hlapp over 5 years ago
- 5 comments
#234 - Bug in splitting character matrix into continuous and discrete
Issue -
State: closed - Opened by hlapp over 5 years ago
Labels: bug
#233 - Print summary doesn't deal properly with zero phylogenetic trees
Issue -
State: closed - Opened by hlapp over 5 years ago
- 1 comment
Labels: bug
#232 - General purpose accessor functions for nexml object inspection
Issue -
State: closed - Opened by hlapp over 5 years ago
- 10 comments
#231 - Rmarkdown version of toplevel README no longer necessary?
Issue -
State: open - Opened by hlapp almost 6 years ago
- 4 comments
Labels: documentation, question
#230 - Thoughts on a hex?
Issue -
State: closed - Opened by cboettig about 6 years ago
- 3 comments
#229 - Switch over to Additional_repositories for CRAN
Pull Request -
State: closed - Opened by cboettig about 6 years ago
- 2 comments
#228 - Cut new release to CRAN?
Issue -
State: closed - Opened by hlapp about 6 years ago
- 5 comments
Labels: question
#227 - Do not add `ter` namespace by default.
Pull Request -
State: closed - Opened by cboettig about 6 years ago
- 1 comment
#226 - Replace taxize with taxald
Pull Request -
State: closed - Opened by cboettig about 6 years ago
- 2 comments
#225 - NCBI URIs
Issue -
State: closed - Opened by cboettig about 6 years ago
- 5 comments
#224 - Replace taxize backend
Issue -
State: closed - Opened by cboettig about 6 years ago
- 1 comment
#223 - Adds pkgdown site, appveyor, updates readme badges
Pull Request -
State: closed - Opened by cboettig about 6 years ago
- 6 comments
#222 - Clean up README, or use to build website
Issue -
State: closed - Opened by hlapp about 6 years ago
- 2 comments
#221 - Adds comparing simplify = FALSE for metadata table
Pull Request -
State: closed - Opened by hlapp about 6 years ago
- 8 comments
#220 - Fixes how metadata arguments are passed on to add_basic_meta
Pull Request -
State: closed - Opened by hlapp about 6 years ago
- 1 comment
#219 - Fixes CDAO namespace definition
Pull Request -
State: closed - Opened by hlapp about 6 years ago
- 2 comments
#218 - Enables handling of files with rootedge
Pull Request -
State: closed - Opened by hlapp about 6 years ago
- 1 comment
#217 - Fixes levels "trees" and "characters" being ignored in add_meta()
Pull Request -
State: closed - Opened by hlapp about 6 years ago
- 1 comment
#216 - Refactors extraction of metadata by property
Pull Request -
State: closed - Opened by hlapp about 6 years ago
- 1 comment
#215 - Adds a utility function for expanding prefixed strings
Pull Request -
State: closed - Opened by hlapp about 6 years ago
- 2 comments
#214 - Reconfigures codecov success thresholds
Pull Request -
State: closed - Opened by hlapp about 6 years ago
- 1 comment
#213 - add_meta() doesn't work for level "trees" and "characters"
Issue -
State: closed - Opened by hlapp about 6 years ago
Labels: bug
#212 - Reconfigures manuscript on CircleCI to run only on master
Pull Request -
State: closed - Opened by hlapp about 6 years ago
- 1 comment
#211 - Reconfigure (or disable) manuscript rebuilds on Circle CI
Issue -
State: closed - Opened by hlapp about 6 years ago
- 2 comments
#210 - Fixes NAs in containing element IDs for nested meta
Pull Request -
State: closed - Opened by hlapp about 6 years ago
- 5 comments
#209 - Fixes a couple small typos
Pull Request -
State: closed - Opened by hlapp about 6 years ago
- 1 comment
#208 - Adds constructors for all classes in the hierarchy
Pull Request -
State: closed - Opened by hlapp about 6 years ago
- 2 comments
#207 - rootEdge disposable?
Issue -
State: closed - Opened by hlapp about 6 years ago
- 3 comments
Labels: question
#206 - Silences warnings about undeclared/unknown classes in method defs
Pull Request -
State: closed - Opened by hlapp about 6 years ago
- 1 comment
#205 - Fixes duplicate S4 class name issues without changing class names
Pull Request -
State: closed - Opened by hlapp about 6 years ago
- 5 comments
#204 - Ensure NULL list elements in nexml slots are not converted to XML
Pull Request -
State: closed - Opened by hlapp about 6 years ago
- 2 comments
#203 - Refactors the S4 class structure for meta elements
Pull Request -
State: closed - Opened by hlapp over 6 years ago
- 3 comments
#202 - Fixes several bugs in handling metadata
Pull Request -
State: closed - Opened by hlapp over 6 years ago
- 2 comments
#201 - Makes most S4 classes in the package pseudo-namespaced
Pull Request -
State: closed - Opened by hlapp over 6 years ago
- 4 comments
#200 - Enables parsing and serialization of XML-type literal metas
Pull Request -
State: closed - Opened by hlapp over 6 years ago
- 1 comment
#199 - Adds simplify option for table returned by get_metadata()
Pull Request -
State: closed - Opened by hlapp over 6 years ago
- 8 comments
#198 - Includes nested meta elements in get_metadata() result
Pull Request -
State: closed - Opened by hlapp over 6 years ago
- 1 comment
#197 - Fix blank node behavior of nested meta elements
Pull Request -
State: closed - Opened by cboettig over 6 years ago
- 2 comments
#196 - Failure to handle nested meta elements
Issue -
State: closed - Opened by hlapp over 6 years ago
- 5 comments
Labels: bug
#195 - Adds description of changes for next release
Pull Request -
State: closed - Opened by hlapp over 6 years ago
#194 - Regenerates man pages with markdown support turned on
Pull Request -
State: closed - Opened by hlapp over 6 years ago
#193 - Patch LiteralMeta use of literal node text
Pull Request -
State: closed - Opened by cboettig over 6 years ago
#192 - Fix serialization of polymorphic and uncertain states
Pull Request -
State: closed - Opened by cboettig over 6 years ago
#191 - Polymorphic (and probably uncertain) states fail to get written out in write.nexml()
Issue -
State: closed - Opened by hlapp over 6 years ago
- 3 comments
Labels: bug
#190 - Certain metadata is getting lost upon reading NeXML
Issue -
State: closed - Opened by hlapp over 6 years ago
- 3 comments
Labels: bug
#189 - patch circle ci
Pull Request -
State: closed - Opened by cboettig over 6 years ago
- 1 comment
#188 - Fixes type coercion for morphological characters with polymorphic states
Pull Request -
State: closed - Opened by hlapp over 6 years ago
- 1 comment
#187 - Provide API to query for member states of polymorphic and uncertain states
Issue -
State: open - Opened by hlapp over 6 years ago
Labels: use-case
#186 - Coercing column type in get_characters() is broken for polymorphic and uncertain states
Issue -
State: closed - Opened by hlapp over 6 years ago
Labels: bug
#185 - Plans for update release to CRAN?
Issue -
State: closed - Opened by hlapp over 6 years ago
- 10 comments
Labels: question
#184 - Drops unneeded suggested dependency on phylobase
Pull Request -
State: closed - Opened by hlapp over 6 years ago
- 1 comment
#183 - Various test failures with devtools::test()
Issue -
State: closed - Opened by hlapp over 6 years ago
- 1 comment
Labels: bug, question
#182 - Housekeeping for build and check artifacts to be ignored
Pull Request -
State: closed - Opened by hlapp over 6 years ago
#181 - Makes test suite more robust, including to missing packages
Pull Request -
State: closed - Opened by hlapp over 6 years ago
- 1 comment
#180 - .Rd files under version control
Issue -
State: closed - Opened by hlapp over 6 years ago
- 2 comments
Labels: question
#179 - Dependencies for package check recursively bring in this package
Issue -
State: closed - Opened by hlapp over 6 years ago
- 2 comments
#178 - test_publish.R is skipped silently in its entirety
Issue -
State: open - Opened by hlapp over 6 years ago
- 3 comments
#177 - taxize_nexml tests are inconsistently in part run and in part skipped on CRAN
Issue -
State: closed - Opened by hlapp over 6 years ago
- 5 comments
#176 - taxize_nexml() fails to call use_entrez()
Issue -
State: closed - Opened by hlapp over 6 years ago
- 1 comment
Labels: bug
#175 - Provide API to query for polymorphic and uncertain states
Issue -
State: closed - Opened by hlapp over 6 years ago
Labels: use-case
#174 - Fixes broken handling of polymorphic and uncertain states
Pull Request -
State: closed - Opened by hlapp over 6 years ago
- 1 comment
#173 - Patch polymorphic / uncertain state type
Pull Request -
State: closed - Opened by cboettig over 6 years ago
- 5 comments
#172 - Handling of polymorphic and uncertain character states is badly broken
Issue -
State: closed - Opened by hlapp over 6 years ago
- 10 comments
Labels: bug
#169 - clash with "tree" class name provided by cli package
Issue -
State: closed - Opened by fmichonneau over 6 years ago
- 6 comments
Labels: bug
#165 - phyloXML: Separate R package or not?
Issue -
State: closed - Opened by gvegayon about 7 years ago
- 8 comments
#161 - xml matrix with polymorphic states
Issue -
State: closed - Opened by laurajackson almost 8 years ago
- 7 comments
#154 - Same namespace URI given under two different prefixes in default list of namespaces
Issue -
State: closed - Opened by cboettig over 8 years ago
- 3 comments
#153 - Updated rendering of README markdown file
Pull Request -
State: closed - Opened by hlapp over 8 years ago
- 1 comment
#140 - Packages uses IDs instead of labels when labels are non-unique
Issue -
State: closed - Opened by hlapp about 9 years ago
- 2 comments
#90 - Other options for `nexml_publish()`
Issue -
State: closed - Opened by sckott over 10 years ago
- 11 comments
Labels: question
#87 - add coercion methods to/from phylobase formats
Issue -
State: closed - Opened by cboettig over 10 years ago
- 1 comment
#75 - add_meta should error if abbreviation is not defined in namespaces
Issue -
State: open - Opened by cboettig over 10 years ago
- 1 comment
Labels: bug
#67 - taxonomy - handling alternative authority sources other than NCBI
Issue -
State: closed - Opened by sckott almost 11 years ago
#66 - taxonomy - taxize tool user interface (interactive prompts)
Issue -
State: closed - Opened by sckott almost 11 years ago
- 1 comment
#55 - phyloxml support?
Issue -
State: closed - Opened by cboettig almost 11 years ago
- 13 comments
Labels: question