robertaboukhalil/ginkgo issues and pull requests

#47 - No server availble for the tasks

Issue - State: open - Opened by wmyuan37 8 months ago - 2 comments

#46 - Cannot select any cells in Step1

Issue - State: open - Opened by RonjaJohnen about 1 year ago - 3 comments

#45 - Gateway timeout

Issue - State: open - Opened by sbradford2 over 1 year ago

#44 - Failed to upload the .bed or .bed.gz

Issue - State: closed - Opened by wmyuan37 over 1 year ago - 2 comments

#43 - Individual MAD score with command line (standalone)

Issue - State: open - Opened by srbehera almost 2 years ago

#42 - Error in clip(tu[1], mean(temp) - (diff(reads$mids)/2), tu[3], tu[4])

Issue - State: closed - Opened by srbehera almost 2 years ago - 1 comment

#41 - Web platform - processing issues

Issue - State: open - Opened by leachim about 2 years ago

#40 - Stalling during Calling copy number events (Computing Cluster (Copy Number))

Issue - State: open - Opened by ncasiraghi almost 3 years ago - 2 comments

#39 - The input file format

Issue - State: closed - Opened by biowumin almost 3 years ago - 1 comment

#38 - Analysis stuck at 66%

Issue - State: closed - Opened by RudolfWach over 3 years ago - 1 comment

#37 - Web-platform: doesn't work

Issue - State: closed - Opened by dulunar almost 4 years ago - 1 comment

#36 - Bad bin is not provided in pre-calculated hg19 genome

Issue - State: closed - Opened by liuzhenyu-yyy almost 4 years ago - 2 comments

#35 - Stalling during copy number calling (initializing variables)

Issue - State: closed - Opened by andrewrlynch about 4 years ago - 2 comments

#34 - duplicates/secondaries

Issue - State: closed - Opened by kunalkathuria about 4 years ago - 2 comments

#33 - CNV1 vs CNV2?

Issue - State: closed - Opened by kunalkathuria about 4 years ago - 3 comments

#32 - Analysis time

Issue - State: closed - Opened by yifnzhao about 4 years ago - 2 comments

#31 - hg38

Issue - State: open - Opened by pawelqs about 4 years ago - 4 comments

#30 - Command line GinkGo

Issue - State: closed - Opened by pawelqs over 4 years ago - 4 comments

#29 - Using Ginkgo on a cell by bin matrix

Issue - State: closed - Opened by pedrofale over 4 years ago - 4 comments

#28 - Web-platform: Error Gateway Time-out

Issue - State: closed - Opened by silvainp over 4 years ago - 3 comments

#27 - Something about reference

Issue - State: closed - Opened by jasminexiao about 5 years ago - 3 comments

#26 - bounds_variable files

Issue - State: closed - Opened by kunalkathuria about 5 years ago - 2 comments

#25 - Running cells with second-best SoS solution?

Issue - State: closed - Opened by laurenhummel about 5 years ago - 1 comment

#24 - Bad Bin -> coordinate map?

Issue - State: closed - Opened by kunalkathuria about 5 years ago - 2 comments

#23 - Lorenz-based cutoff metric?

Issue - State: closed - Opened by kunalkathuria about 5 years ago - 2 comments

#22 - bed.gz files not visible

Issue - State: closed - Opened by kunalkathuria about 5 years ago

#21 - planning to add hg38 support?

Issue - State: closed - Opened by vleblanc over 5 years ago - 1 comment

#20 - untar database

Issue - State: closed - Opened by hlxie over 5 years ago - 1 comment

#19 - Improve CLI usage

Pull Request - State: closed - Opened by jherrero over 5 years ago

#18 - server down?

Issue - State: closed - Opened by proukakis over 5 years ago - 3 comments

#17 - MAD exact

Issue - State: closed - Opened by mariakalyva over 5 years ago - 11 comments

#16 - Uploading issue

Issue - State: closed - Opened by rujinwang almost 6 years ago - 5 comments

#15 - Ginkgo Web Platform: Extracting Read count data

Issue - State: closed - Opened by jirianto almost 6 years ago - 2 comments

#14 - Issue #13: FACS file parsing breaking

Pull Request - State: closed - Opened by robertaboukhalil almost 6 years ago - 3 comments

#13 - Gingko Web Platform: Copy number calls stalling with FACS input.

Issue - State: open - Opened by andrewrlynch about 6 years ago - 12 comments

#12 - Fixed MAD analysis for a subset of cells

Pull Request - State: closed - Opened by jpritt about 6 years ago - 1 comment

#11 - Genomes data url cannot be accessed.

Issue - State: closed - Opened by zhanghao-njmu over 6 years ago - 1 comment

#10 - Can Gingko be used to determine CNVs from single cell RNA seq data?

Issue - State: closed - Opened by kragrawa almost 7 years ago - 1 comment

#9 - problem in the R code

Issue - State: closed - Opened by RichardCorbett over 7 years ago - 4 comments

#8 - How to define the reference sample?

Issue - State: closed - Opened by anyone1985 over 7 years ago - 4 comments

#7 - Patch for issue #6

Pull Request - State: closed - Opened by robertaboukhalil over 7 years ago

#6 - BWA bin boundaries disagree with bowtie bin boundaries

Issue - State: closed - Opened by mschatz over 7 years ago - 3 comments

#5 - Phylogenetic Tree output?

Issue - State: closed - Opened by jmfa over 7 years ago - 3 comments

#4 - standalone ginkgo: SegCopy not found?

Issue - State: closed - Opened by biocyberman almost 8 years ago - 6 comments

#3 - Standalone mode

Pull Request - State: closed - Opened by jherrero over 8 years ago - 1 comment

#2 - Typos + support BED files without 'chr' in binUnsorted

Pull Request - State: closed - Opened by jherrero over 8 years ago

#1 - Update analyze

Pull Request - State: closed - Opened by tgarvin over 11 years ago

GitHub / robertaboukhalil/ginkgo issues and pull requests