robbisg/pyitab issues and pull requests

#92 - Remove support to python 3.7

Issue - State: open - Opened by robbisg 8 months ago
Labels: implementation

#91 - Remove conf file from analysis

Issue - State: open - Opened by robbisg 8 months ago
Labels: implementation

#90 - Bump scipy from 1.2 to 1.10.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#89 - Add utilities for Esketamina analysis

Issue - State: open - Opened by robbisg almost 2 years ago
Labels: new-feature

#88 - Save functions must be BIDS compliant

Issue - State: open - Opened by robbisg almost 2 years ago
Labels: bug, bids, results

#87 - filter_dataframe does not include greater/lower than conditions

Issue - State: open - Opened by robbisg about 2 years ago
Labels: new-feature

#86 - Improving logging

Issue - State: open - Opened by robbisg almost 3 years ago
Labels: implementation

#85 - Build a save function to save partial transformation

Issue - State: open - Opened by robbisg about 3 years ago

#84 - Fingerprint Analyses can use scores in utils.scores

Issue - State: open - Opened by robbisg about 3 years ago
Labels: implementation

#83 - Decoding results suppose a structure of results.

Issue - State: open - Opened by robbisg about 3 years ago
Labels: bug, implementation

#82 - Managing Permutations

Issue - State: open - Opened by robbisg about 3 years ago
Labels: implementation

#81 - Add _store_info and _get_filename in Analyzer

Issue - State: open - Opened by robbisg over 3 years ago
Labels: results

#80 - Fingerprint Analyses

Issue - State: open - Opened by robbisg over 3 years ago
Labels: new-algorithm, thread

#79 - BUG: Decoding has LabelEncoder that harms Regression analyses

Issue - State: closed - Opened by robbisg over 3 years ago
Labels: bug

#78 - TEST: fix test_save_multisubject_decoding test_save_pipeline_decoding

Issue - State: open - Opened by robbisg over 3 years ago

#77 - Investigate the Simulator class

Issue - State: open - Opened by robbisg over 3 years ago - 1 comment
Labels: c2b, implementation

#76 - Move all function definitions to init.py to quickly import them

Issue - State: open - Opened by robbisg over 3 years ago
Labels: implementation

#75 - Code refinement

Issue - State: open - Opened by robbisg over 3 years ago
Labels: implementation, thread

#74 - load_bids_attribute fails to load events

Issue - State: open - Opened by robbisg about 4 years ago
Labels: bug, bids, reproducibility

#73 - Pipeline id and directory id are overwritten in get_results

Issue - State: open - Opened by robbisg about 4 years ago
Labels: bug, results

#72 - Build a SlidingWindowEstimator or Transformer

Issue - State: open - Opened by robbisg over 4 years ago
Labels: connectivity, c2b, new-algorithm

#71 - Iterator should manage dictionaries correctly

Issue - State: open - Opened by robbisg over 4 years ago
Labels: implementation

#70 - DatasetFxNormalizer in Iterator

Issue - State: open - Opened by robbisg over 4 years ago
Labels: bug, implementation

#69 - get_results memory leak

Issue - State: closed - Opened by robbisg over 4 years ago

#68 - get_atlas_info must return a dictionary

Issue - State: open - Opened by robbisg over 4 years ago
Labels: implementation

#67 - calculate_metrics and find_best_k then should be modified to run in Pipeline

Issue - State: open - Opened by robbisg over 4 years ago
Labels: c2b, implementation

#66 - num in AnalysisIterato has some f******* strange behaviour!

Issue - State: closed - Opened by robbisg over 4 years ago
Labels: bug

#65 - filter_dataframe does not work with array

Issue - State: open - Opened by robbisg over 4 years ago
Labels: bug, new-feature, reproducibility

#64 - SimulatorLoader creates a dataset for each iteration

Issue - State: open - Opened by robbisg over 4 years ago
Labels: bug, implementation

#63 - Parallel mess up analyses when used with AnalysisIterator

Issue - State: closed - Opened by robbisg almost 5 years ago
Labels: bug

#62 - Dataset Loader append all ds attributes

Issue - State: closed - Opened by robbisg almost 5 years ago - 1 comment
Labels: bug

#61 - Iterator should be more flexible

Issue - State: closed - Opened by robbisg almost 5 years ago
Labels: new-feature

#60 - Connectivity Package

Issue - State: open - Opened by robbisg almost 5 years ago
Labels: connectivity, c2b, thread

#59 - Documentation

Issue - State: open - Opened by robbisg almost 5 years ago - 1 comment
Labels: documentation, thread

#58 - Use pandas datasets instead of pymvpa

Issue - State: open - Opened by robbisg almost 5 years ago - 1 comment
Labels: implementation

#57 - Brain states Simulation

Issue - State: open - Opened by robbisg almost 5 years ago - 1 comment
Labels: new-feature, c2b, implementation

#56 - In get_permutation_values the value of true decoding is hardcoded

Issue - State: closed - Opened by robbisg almost 5 years ago - 1 comment
Labels: bug

#55 - Implement StateAnalyzer

Issue - State: open - Opened by robbisg almost 5 years ago - 1 comment
Labels: c2b, new-algorithm

#54 - Add description of pipeline in AnalysisPipeline

Issue - State: open - Opened by robbisg about 5 years ago
Labels: new-feature

#53 - Use a pipeline for connectivity analysis

Issue - State: open - Opened by robbisg about 5 years ago
Labels: new-feature, connectivity, unclear

#52 - Check Cross validation parameters

Issue - State: closed - Opened by robbisg about 5 years ago
Labels: bug

#51 - Result loading for prepro is not well supported

Issue - State: open - Opened by robbisg about 5 years ago
Labels: bug, results, implementation

#50 - FileNotFoundError in get_results

Issue - State: closed - Opened by robbisg about 5 years ago
Labels: bug, bids

#49 - Improve file searching in load data

Issue - State: open - Opened by robbisg about 5 years ago
Labels: new-feature, unclear

#48 - sample_slicer bug in AnalysisIterator with configuration

Issue - State: closed - Opened by robbisg over 5 years ago
Labels: bug, new-feature

#47 - Add sentry signal when an analysis finishes or crashes

Issue - State: closed - Opened by robbisg over 5 years ago
Labels: new-feature

#46 - SearchLight save_partial doesn't save image when finishes

Issue - State: closed - Opened by robbisg over 5 years ago
Labels: bug

#45 - Single subject searchlight has group as first bids name part

Issue - State: open - Opened by robbisg over 5 years ago
Labels: bug, bids, results, unclear

#44 - Add dataset_description.json to result folder

Issue - State: closed - Opened by robbisg over 5 years ago - 1 comment
Labels: bug, results

#43 - Remove hard-coded configuration.json from results.bids package

Issue - State: open - Opened by robbisg over 5 years ago
Labels: new-feature, bids

#42 - Analyses with same id and different subj must be in the same dir

Issue - State: closed - Opened by robbisg over 5 years ago - 1 comment
Labels: new-feature, bids

#41 - Remove underscore from results directories

Issue - State: closed - Opened by robbisg over 5 years ago
Labels: new-feature

#40 - TypeError("init() got multiple values for keyword argument 'name'")

Issue - State: closed - Opened by robbisg over 5 years ago
Labels: bug

#39 - ValueError: could not convert string to float: 'L'

Issue - State: closed - Opened by robbisg over 5 years ago
Labels: bug

#38 - Transformers must add their info on transformed ds

Issue - State: closed - Opened by robbisg over 5 years ago
Labels: new-feature

#37 - TypeError: init() got multiple values for keyword argument 'name'

Issue - State: closed - Opened by robbisg over 5 years ago - 1 comment

#36 - Build a function to check ```data_path``` configuration field

Issue - State: open - Opened by robbisg over 5 years ago
Labels: bug, new-feature, unclear

#35 - Information about atlases

Issue - State: closed - Opened by robbisg over 5 years ago
Labels: bug

#34 - Change deprecated return_indices for imblearn

Issue - State: closed - Opened by robbisg over 5 years ago
Labels: deprecated

#33 - Use external packages for nilearn and scikit-learn modified libraries

Issue - State: closed - Opened by robbisg over 5 years ago
Labels: new-feature

#32 - Within subject analyses

Issue - State: closed - Opened by robbisg over 5 years ago - 1 comment
Labels: new-feature

#31 - Add Dataset Loading into Configurator

Issue - State: closed - Opened by robbisg over 5 years ago

#30 - Create a general Configurator class.

Issue - State: closed - Opened by robbisg over 5 years ago

#29 - Coverage

Issue - State: open - Opened by robbisg over 5 years ago - 1 comment
Labels: thread

#28 - Improve memory management

Issue - State: open - Opened by robbisg over 5 years ago - 1 comment
Labels: new-feature

#27 - Convert results dir structure in a bids-ish way!

Issue - State: open - Opened by robbisg over 5 years ago - 1 comment
Labels: bids, thread

#26 - Correlation / Coherence Analyzer

Issue - State: open - Opened by robbisg over 5 years ago - 3 comments
Labels: connectivity, new-algorithm

#25 - Averager/PCA/MVPC Transformer

Issue - State: open - Opened by robbisg over 5 years ago
Labels: connectivity, new-algorithm

#24 - FrequencyFilter Transformer

Issue - State: open - Opened by robbisg over 5 years ago
Labels: connectivity, new-algorithm

#23 - Frame Displacement Transformer

Issue - State: open - Opened by robbisg over 5 years ago
Labels: connectivity, new-algorithm

#22 - Regressor Transformer

Issue - State: closed - Opened by robbisg over 5 years ago - 3 comments
Labels: connectivity, new-algorithm

#21 - Loading of movement attributes

Issue - State: open - Opened by robbisg over 5 years ago - 1 comment
Labels: new-feature, connectivity

#20 - Loading of maps for connectivity (GM, WM etc.)

Issue - State: open - Opened by robbisg over 5 years ago
Labels: new-feature, connectivity

#19 - Searchlight partial results

Issue - State: open - Opened by robbisg almost 6 years ago - 1 comment
Labels: new-feature

#18 - IndexError: too many indices for array

Issue - State: closed - Opened by robbisg almost 6 years ago - 1 comment
Labels: bug

#17 - New features

Issue - State: open - Opened by robbisg almost 6 years ago
Labels: new-feature, thread

#16 - Scoring Issue in TemporalDecoding

Issue - State: open - Opened by robbisg about 6 years ago
Labels: bug

#15 - Balancer for TimeGeneralizationDecoding

Issue - State: closed - Opened by robbisg about 6 years ago - 4 comments
Labels: new-feature

#14 - Generate an id for the Analyzer class

Issue - State: closed - Opened by robbisg about 6 years ago - 1 comment

#13 - Build a MetaAnalyzer to easily setup an analysis.

Issue - State: closed - Opened by robbisg about 6 years ago - 1 comment

#12 - BIDS reader

Issue - State: closed - Opened by robbisg about 6 years ago - 1 comment

#11 - Error on detrending

Issue - State: closed - Opened by robbisg about 6 years ago

#10 - Cross-decoding

Issue - State: open - Opened by robbisg about 6 years ago
Labels: new-algorithm

#9 - Iterator is impossible to use when target_transformation and sample_slicer are dependent.

Issue - State: closed - Opened by robbisg about 6 years ago - 1 comment

#8 - Implement an estimator for multivariate connectivity/DVARS

Issue - State: closed - Opened by robbisg about 6 years ago

#7 - Write results functions.

Issue - State: closed - Opened by robbisg about 6 years ago
Labels: new-feature

#6 - Balancer utils package

Issue - State: open - Opened by robbisg about 6 years ago
Labels: documentation

#5 - Within subject searchlight

Issue - State: closed - Opened by robbisg about 6 years ago - 1 comment

#4 - Connectivity Analyses

Issue - State: closed - Opened by robbisg about 6 years ago - 1 comment

#3 - States

Issue - State: closed - Opened by robbisg about 6 years ago - 1 comment

#2 - TemporalGeneralizatorTransformer

Issue - State: closed - Opened by robbisg about 6 years ago - 1 comment

#1 - Issues

Issue - State: closed - Opened by robbisg about 6 years ago

GitHub / robbisg/pyitab issues and pull requests