Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / rnabioco/djvdj issues and pull requests

#100 - Clone similarity between samples

Issue - State: closed - Opened by potterae over 2 years ago - 3 comments

#99 - Clustering

Pull Request - State: closed - Opened by sheridar over 2 years ago

#98 - TCR antigene prediction

Issue - State: open - Opened by Ahmedalaraby20 over 2 years ago
Labels: enhancement

#97 - Get complete TCR seq for cloning

Issue - State: open - Opened by sheridar over 2 years ago
Labels: enhancement

#96 - Plotting

Pull Request - State: closed - Opened by sheridar over 2 years ago

#95 - More visualization methods

Issue - State: closed - Opened by Ahmedalaraby20 almost 3 years ago - 9 comments
Labels: enhancement

#94 - import_vdj function error

Issue - State: closed - Opened by jihe-liu almost 3 years ago - 5 comments

#93 - Performance

Pull Request - State: closed - Opened by sheridar about 3 years ago

#92 - test-coverage workflow failing

Issue - State: closed - Opened by sheridar about 3 years ago

#91 - logo is displayed very large on site

Issue - State: closed - Opened by sheridar about 3 years ago

#90 - ROC analysis of CITE-seq / AVID-seq reagents

Issue - State: open - Opened by jayhesselberth about 3 years ago - 2 comments
Labels: enhancement

#89 - default value for calc_similarity

Issue - State: closed - Opened by sheridar about 3 years ago
Labels: bug

#88 - Citation?

Issue - State: closed - Opened by seanken about 3 years ago - 1 comment

#87 - add indels

Pull Request - State: closed - Opened by sheridar about 3 years ago - 1 comment

#86 - Installing issue

Issue - State: closed - Opened by Ahmedalaraby20 about 3 years ago - 2 comments

#85 - Import vdj

Pull Request - State: closed - Opened by sheridar over 3 years ago

#84 - error while running import_vdj

Issue - State: closed - Opened by gt7901b over 3 years ago - 4 comments
Labels: bug

#83 - 79a543eb55 workflows

Pull Request - State: closed - Opened by sheridar over 3 years ago

#82 - Cdr3 length

Pull Request - State: closed - Opened by sheridar over 3 years ago

#81 - Plot usage

Pull Request - State: closed - Opened by sheridar over 3 years ago

#80 - vignette update

Pull Request - State: closed - Opened by sheridar over 3 years ago

#79 - Vignette

Pull Request - State: closed - Opened by sheridar over 3 years ago

#78 - plot CDR3 length

Issue - State: closed - Opened by sheridar over 3 years ago - 2 comments
Labels: enhancement

#77 - Import vdj

Pull Request - State: closed - Opened by sheridar over 3 years ago

#76 - Cell barcodes do not match those in the object

Issue - State: closed - Opened by royfrancis over 3 years ago - 7 comments

#75 - Add data sets for readme vignette rendering

Issue - State: closed - Opened by jayhesselberth over 3 years ago - 4 comments

#74 - calc_usage tests

Issue - State: closed - Opened by sheridar over 3 years ago - 1 comment
Labels: enhancement

#73 - Dispatch

Pull Request - State: closed - Opened by sheridar over 3 years ago - 1 comment

#72 - plot_abundance fixes

Pull Request - State: closed - Opened by sheridar over 3 years ago

#71 - added additional checks to import_vdj

Pull Request - State: closed - Opened by sheridar over 3 years ago - 1 comment

#70 - write more import_vdj tests

Issue - State: closed - Opened by sheridar over 3 years ago - 1 comment
Labels: enhancement

#69 - filter_vdj leaves extra column in meta.data

Issue - State: closed - Opened by sheridar over 3 years ago - 1 comment
Labels: bug

#68 - import_vdj bug when assigning isotypes

Pull Request - State: closed - Opened by sheridar over 3 years ago

#67 - calc_usage check number of chains and genes

Issue - State: closed - Opened by sheridar over 3 years ago - 1 comment
Labels: enhancement

#66 - mutate_vdj overwrite existing meta.data columns

Issue - State: closed - Opened by sheridar over 3 years ago
Labels: bug

#65 - input for djvdj

Issue - State: closed - Opened by ibseq almost 4 years ago - 1 comment

#64 - plot_abundance ordering

Pull Request - State: closed - Opened by sheridar almost 4 years ago

#63 - import vdj empty clontype_id

Pull Request - State: closed - Opened by sheridar almost 4 years ago

#62 - import vdj break when clonotype id is NA

Issue - State: closed - Opened by aurelBZH almost 4 years ago - 3 comments
Labels: bug

#61 - Misc

Pull Request - State: closed - Opened by sheridar almost 4 years ago

#60 - djvdj for SingleCellExperiment objects

Issue - State: closed - Opened by friedue about 4 years ago - 3 comments
Labels: enhancement

#59 - test for blank ggplot?

Issue - State: closed - Opened by sheridar about 4 years ago

#58 - default args

Pull Request - State: closed - Opened by sheridar over 4 years ago

#57 - small vignette fix

Pull Request - State: closed - Opened by sheridar over 4 years ago

#56 - small cleanup

Pull Request - State: closed - Opened by sheridar over 4 years ago

#55 - small plot update

Pull Request - State: closed - Opened by sheridar over 4 years ago

#54 - Tests

Pull Request - State: closed - Opened by sheridar over 4 years ago

#53 - Tests

Pull Request - State: closed - Opened by sheridar over 4 years ago

#52 - worked on tests

Pull Request - State: closed - Opened by sheridar over 4 years ago

#51 - fixed test warnings

Pull Request - State: closed - Opened by sheridar over 4 years ago

#50 - tests

Pull Request - State: closed - Opened by sheridar over 4 years ago

#49 - Tests

Pull Request - State: closed - Opened by sheridar over 4 years ago

#48 - Add useful examples

Issue - State: closed - Opened by jayhesselberth over 4 years ago - 3 comments
Labels: documentation

#47 - Use css for bold titles

Pull Request - State: closed - Opened by jayhesselberth over 4 years ago

#46 - tests

Pull Request - State: closed - Opened by sheridar over 4 years ago

#45 - Import

Pull Request - State: closed - Opened by sheridar over 4 years ago

#44 - Import

Pull Request - State: closed - Opened by sheridar over 4 years ago

#43 - import_vdj features

Issue - State: closed - Opened by sheridar over 4 years ago

#42 - gh-pages

Pull Request - State: closed - Opened by sheridar over 4 years ago

#41 - Vignette

Pull Request - State: closed - Opened by sheridar over 4 years ago

#40 - gh-pages

Pull Request - State: closed - Opened by sheridar over 4 years ago

#39 - gh-pages

Pull Request - State: closed - Opened by sheridar over 4 years ago

#38 - gh-pages

Pull Request - State: closed - Opened by sheridar over 4 years ago

#37 - gh-pages

Pull Request - State: closed - Opened by sheridar over 4 years ago

#36 - gh-pages

Pull Request - State: closed - Opened by sheridar over 4 years ago

#35 - gh-pages

Pull Request - State: closed - Opened by sheridar over 4 years ago

#34 - gh-pages

Pull Request - State: closed - Opened by sheridar over 4 years ago

#33 - Vignette

Pull Request - State: closed - Opened by sheridar over 4 years ago

#32 - gh-pages

Pull Request - State: closed - Opened by sheridar over 4 years ago

#31 - gh-pages

Pull Request - State: closed - Opened by sheridar over 4 years ago

#30 - gh-pages

Pull Request - State: closed - Opened by sheridar over 4 years ago

#29 - trim dependencies

Issue - State: closed - Opened by sheridar over 4 years ago

#28 - integrated abdiv

Pull Request - State: closed - Opened by sheridar over 4 years ago - 4 comments

#27 - calc_usage, plot_usage

Pull Request - State: closed - Opened by sheridar over 4 years ago

#26 - simplify calc_overlap

Pull Request - State: closed - Opened by sheridar over 4 years ago

#25 - DMS BCR experiment

Issue - State: open - Opened by jayhesselberth over 4 years ago

#24 - Plotting

Pull Request - State: closed - Opened by sheridar over 4 years ago

#23 - Vignette

Pull Request - State: closed - Opened by sheridar over 4 years ago

#22 - worked on calc_jaccard #4

Pull Request - State: closed - Opened by sheridar over 4 years ago

#21 - Import filter

Pull Request - State: closed - Opened by sheridar over 4 years ago

#20 - Usage

Pull Request - State: closed - Opened by sheridar over 4 years ago

#19 - wrapper for export to ucsc cell browser

Issue - State: open - Opened by raysinensis over 4 years ago - 3 comments
Labels: enhancement

#18 - Port code?

Issue - State: closed - Opened by jayhesselberth over 4 years ago - 1 comment

#17 - cleanup filter_vdj

Pull Request - State: closed - Opened by sheridar over 4 years ago

#16 - Package infrastructure (WIP)

Pull Request - State: closed - Opened by jayhesselberth over 4 years ago - 3 comments

#15 - running package functions after loading

Pull Request - State: closed - Opened by raysinensis over 4 years ago - 1 comment

#14 - 10x data - multiplexed antigen recognition

Issue - State: open - Opened by raysinensis over 4 years ago - 2 comments

#13 - Antigen affinity score

Issue - State: open - Opened by sheridar over 4 years ago - 1 comment
Labels: enhancement

#12 - incorporate VDJ gene usage info per cluster

Issue - State: closed - Opened by sheridar over 4 years ago

#11 - CDR3 motifs per cluster

Issue - State: closed - Opened by sheridar over 4 years ago
Labels: enhancement

#10 - B cell lineaging/clustering

Issue - State: open - Opened by sheridar over 4 years ago - 3 comments
Labels: enhancement

#9 - libra-seq data

Issue - State: open - Opened by raysinensis over 4 years ago

#8 - Identify useful data sets

Issue - State: open - Opened by jayhesselberth over 4 years ago - 4 comments

#7 - Other plotting functions?

Issue - State: closed - Opened by sheridar over 4 years ago

#6 - Move away from !!sym()

Issue - State: closed - Opened by sheridar over 4 years ago

#5 - Best way to store VDJ data in object

Issue - State: closed - Opened by sheridar over 4 years ago - 3 comments

#4 - Simplify calc_jaccard

Issue - State: closed - Opened by sheridar over 4 years ago - 1 comment

#3 - calc_jaccard handle empty clusters w/o error

Issue - State: closed - Opened by sheridar over 4 years ago

#2 - New diversity metric

Issue - State: closed - Opened by sheridar over 4 years ago

#1 - Potential Features

Issue - State: open - Opened by sheridar almost 5 years ago - 3 comments
Labels: enhancement