rnabioco/clustifyr-web-app issues and pull requests

#72 - tooltip and other ui changes, #62

Pull Request - State: closed - Opened by raysinensis over 3 years ago

#71 - Url

Pull Request - State: closed - Opened by raysinensis almost 4 years ago

#70 - interface

Pull Request - State: closed - Opened by raysinensis almost 4 years ago

#69 - parse url to focus on tab

Pull Request - State: closed - Opened by raysinensis almost 4 years ago

#68 - Someta data

Pull Request - State: closed - Opened by raysinensis almost 4 years ago

#67 - shinyapps.io 'Out of memory!'

Issue - State: closed - Opened by raysinensis almost 4 years ago - 2 comments

#66 - use pheatmap, closes #58

Pull Request - State: closed - Opened by kriemo almost 4 years ago

#65 - pop up to someta reporting

Issue - State: closed - Opened by raysinensis almost 4 years ago

#64 - error messages when wrong files are uploaded

Issue - State: open - Opened by raysinensis almost 4 years ago

#63 - separate page for loading object?

Issue - State: closed - Opened by raysinensis almost 4 years ago

#62 - Hover over tips and other guiding hints

Issue - State: closed - Opened by raysinensis almost 4 years ago

#61 - use case for example

Issue - State: open - Opened by raysinensis almost 4 years ago - 1 comment

#60 - look into package installation upon loading of Shiny app

Issue - State: closed - Opened by raysinensis almost 4 years ago

#59 - links to GEO records, ref intro, etc

Issue - State: closed - Opened by raysinensis almost 4 years ago

#58 - Change from complexheatmap to pheatmatp

Issue - State: closed - Opened by SidhantPuntambekar almost 4 years ago

#57 - Geo2

Pull Request - State: closed - Opened by raysinensis almost 4 years ago

#56 - Use custom reference

Issue - State: closed - Opened by raysinensis almost 4 years ago

#55 - DT datatable formatting clean up

Issue - State: closed - Opened by raysinensis almost 4 years ago

#54 - repo cleanup

Issue - State: closed - Opened by kriemo almost 4 years ago

#53 - Moved cluster column selection to the metadata tab

Pull Request - State: closed - Opened by SidhantPuntambekar almost 4 years ago
Labels: enhancement

#52 - logo for clustifyr

Issue - State: closed - Opened by raysinensis almost 4 years ago - 1 comment

#51 - move cluster column selection to the metadata tab (since the preview is there?)

Issue - State: closed - Opened by raysinensis almost 4 years ago - 1 comment

#50 - handling rds input

Issue - State: closed - Opened by raysinensis almost 4 years ago - 1 comment

#49 - Data read and preview on minimum rows only

Issue - State: closed - Opened by raysinensis almost 4 years ago

#48 - Change reading of files to fread

Pull Request - State: closed - Opened by SidhantPuntambekar almost 4 years ago - 1 comment
Labels: bug, enhancement

#47 - Different levels of output

Issue - State: closed - Opened by raysinensis almost 4 years ago - 2 comments

#46 - more test datasets

Issue - State: closed - Opened by raysinensis almost 4 years ago

#45 - poster planning

Issue - State: open - Opened by raysinensis almost 4 years ago - 1 comment

#44 - a bit of tracking with google analytics

Issue - State: open - Opened by raysinensis almost 4 years ago

#43 - Add Shiny Dashboard

Pull Request - State: closed - Opened by SidhantPuntambekar almost 4 years ago
Labels: enhancement

#42 - .gz not supported

Issue - State: closed - Opened by raysinensis almost 4 years ago - 1 comment

#41 - record message/warning into optional display log

Issue - State: closed - Opened by raysinensis almost 4 years ago - 1 comment

#40 - progress using waiter, #23

Pull Request - State: closed - Opened by raysinensis almost 4 years ago

#39 - Fix table UI for matrix, metadata, reference_matrix, and clustify matrix

Pull Request - State: closed - Opened by SidhantPuntambekar almost 4 years ago
Labels: enhancement

#38 - example heatmap plotting code

Pull Request - State: closed - Opened by kriemo almost 4 years ago

#37 - loading sample data

Pull Request - State: closed - Opened by raysinensis almost 4 years ago

#36 - output$clustify <- renderTable should use dataClustify()

Issue - State: closed - Opened by raysinensis almost 4 years ago

#35 - Load example data

Issue - State: closed - Opened by raysinensis almost 4 years ago - 1 comment

#34 - choose cluster column through preview

Issue - State: closed - Opened by raysinensis almost 4 years ago - 1 comment

#33 - about page

Issue - State: closed - Opened by raysinensis almost 4 years ago - 2 comments

#32 - option to query geo record

Issue - State: closed - Opened by kriemo almost 4 years ago - 1 comment

#31 - option to pull data from ucsc cellbrowser or other?

Issue - State: open - Opened by kriemo almost 4 years ago - 1 comment

#30 - show heatmap

Issue - State: closed - Opened by kriemo almost 4 years ago

#29 - optionally run overcluster_test() from clustifyr

Issue - State: open - Opened by kriemo almost 4 years ago

#28 - Shiny Dashboard

Issue - State: closed - Opened by SidhantPuntambekar almost 4 years ago

#27 - Add clustifyr option to select # of variable genes

Issue - State: open - Opened by kriemo almost 4 years ago - 1 comment

#26 - separate selection of options from processing of data

Issue - State: open - Opened by kriemo almost 4 years ago

#25 - add table reading options for metadata and matrix independently

Issue - State: closed - Opened by kriemo almost 4 years ago

#24 - Modify table UI

Issue - State: closed - Opened by kriemo almost 4 years ago

#23 - progress bar or loading animation for some steps

Issue - State: closed - Opened by raysinensis almost 4 years ago - 1 comment

#22 - Similar packages for inspiration

Issue - State: closed - Opened by raysinensis almost 4 years ago

#21 - One button upload to ...?

Issue - State: closed - Opened by raysinensis almost 4 years ago

#20 - Take GEO # and try to make ref

Issue - State: closed - Opened by raysinensis almost 4 years ago - 1 comment

#19 - Removed normalization from Seurat object

Pull Request - State: closed - Opened by SidhantPuntambekar almost 4 years ago
Labels: enhancement

#18 - make renderTable react to data1/2()

Issue - State: closed - Opened by raysinensis about 4 years ago - 1 comment

#17 - Handling normalized matrix

Issue - State: closed - Opened by raysinensis about 4 years ago

#16 - for download, use `write_csv`

Issue - State: closed - Opened by raysinensis about 4 years ago

#15 - read.csv or read_tsv, pick one

Issue - State: closed - Opened by raysinensis about 4 years ago - 2 comments

#14 - Call experiment hub outside of reactives

Issue - State: closed - Opened by raysinensis about 4 years ago

#13 - unable to reproduce error/hang of using cell_id in clustifyr

Issue - State: closed - Opened by raysinensis about 4 years ago

#12 - Fixed issue with hanging clustering process

Pull Request - State: closed - Opened by SidhantPuntambekar about 4 years ago

#11 - Added download handler and tried to fix hanging process of metadata c…

Pull Request - State: closed - Opened by SidhantPuntambekar about 4 years ago
Labels: enhancement

#10 - Added download button to shiny app

Pull Request - State: closed - Opened by SidhantPuntambekar about 4 years ago
Labels: enhancement

#9 - Finished clustify function and made cell type col drop down

Pull Request - State: closed - Opened by SidhantPuntambekar about 4 years ago
Labels: enhancement

#8 - Added Rproject and modified clustify benchmarking feature

Pull Request - State: closed - Opened by SidhantPuntambekar about 4 years ago

#7 - Downstream visualizations and output

Issue - State: open - Opened by raysinensis about 4 years ago

#6 - Use Seurat functions as backend for processing

Issue - State: closed - Opened by raysinensis about 4 years ago

#5 - Added drop down menu for clustifyrdatahub references

Pull Request - State: closed - Opened by SidhantPuntambekar about 4 years ago
Labels: enhancement

#4 - Display both heads of input files

Pull Request - State: closed - Opened by SidhantPuntambekar about 4 years ago
Labels: enhancement

#3 - Add example data

Pull Request - State: closed - Opened by kriemo about 4 years ago

#2 - Display df2 head

Pull Request - State: closed - Opened by SidhantPuntambekar about 4 years ago
Labels: enhancement

#1 - Added code from local repo on my personal github

Pull Request - State: closed - Opened by SidhantPuntambekar about 4 years ago
Labels: enhancement

GitHub / rnabioco/clustifyr-web-app issues and pull requests