Ecosyste.ms: Issues

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GitHub / rmarkello/abagen issues and pull requests

#136 - [FIX,ENH] Error in get_expression_data, gene stability calculation

Pull Request - State: closed - Opened by rmarkello almost 5 years ago - 1 comment

#135 - [ENH,REF] New norms, utils, renamed modules

Pull Request - State: closed - Opened by rmarkello almost 5 years ago - 1 comment

#134 - [FIX] Coerce atlas dataobj to arr before indexing

Pull Request - State: closed - Opened by rmarkello almost 5 years ago

#133 - [REF] Drop probes with invalid/missing Entrez ID

Pull Request - State: closed - Opened by rmarkello about 5 years ago - 1 comment

#118 - Add issue + PR templates

Issue - State: closed - Opened by rmarkello about 5 years ago - 1 comment
Labels: enhancement, documentation, high priority

#117 - [FIX] specify engine='python' in pandas queries

Pull Request - State: closed - Opened by VinceBaz over 5 years ago - 2 comments

#115 - Matching parcellations to individual donor brains

Issue - State: closed - Opened by rmarkello over 5 years ago - 2 comments
Labels: enhancement, question

#114 - Drop probes without valid entrez ID by default

Issue - State: closed - Opened by rmarkello over 5 years ago
Labels: refactor

#98 - Include RNAseq data fetchers + loaders?

Issue - State: closed - Opened by rmarkello over 5 years ago
Labels: enhancement

#97 - Allow single hemisphere mirroring with `lr_mirror`

Issue - State: closed - Opened by rmarkello over 5 years ago
Labels: enhancement, refactor

#80 - Extra space in `abagen.correct.remove_distance` doc-string

Issue - State: closed - Opened by rmarkello over 5 years ago - 1 comment
Labels: good first issue, documentation, refactor

#74 - Make use of pytest parametrize consistent in testing framework

Issue - State: closed - Opened by rmarkello over 5 years ago - 2 comments
Labels: refactor, testing

#73 - Unquote printed Allen API URL query in abagen.mouse

Issue - State: closed - Opened by rmarkello over 5 years ago - 1 comment
Labels: good first issue, refactor

#69 - Add option to use Allen ontology for collapsing across samples

Issue - State: open - Opened by rmarkello over 5 years ago - 1 comment
Labels: enhancement, refactor

#68 - Revamp testing framework to alleviate downloads from Allen

Issue - State: closed - Opened by rmarkello over 5 years ago - 1 comment
Labels: refactor, testing

#55 - Change abagen.mouse data fetcher caching location

Issue - State: closed - Opened by rmarkello over 5 years ago - 1 comment
Labels: refactor

#53 - Add interpolation for missing ROIs

Issue - State: closed - Opened by rmarkello over 5 years ago
Labels: enhancement

#50 - Integrate ability to handle surface parcellations

Issue - State: closed - Opened by rmarkello over 5 years ago
Labels: enhancement

#47 - Output values

Issue - State: closed - Opened by pmccolganni over 5 years ago - 1 comment
Labels: question

#46 - Get expression samples inside a supplied mask

Issue - State: closed - Opened by rmarkello over 5 years ago
Labels: enhancement

#6 - Constrain matching of microarray samples to atlas regions

Issue - State: closed - Opened by rmarkello over 6 years ago
Labels: refactor, high priority