Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / rkimoakbioinformatics/oakvar issues and pull requests
#57 - [BUG] Issue with annotators (cadd, hgvs)
Issue -
State: closed - Opened by MariosGvr 3 months ago
- 11 comments
Labels: bug
#56 - bug_fix_read_sql
Pull Request -
State: closed - Opened by acmoudleysa 10 months ago
- 1 comment
#55 - [BUG] `get_wgs_reader` method sometimes returns lowercase bases.
Issue -
State: closed - Opened by sinmojito 10 months ago
- 3 comments
Labels: bug
#54 - read_crv first row deletion fix
Pull Request -
State: closed - Opened by sinmojito 11 months ago
- 1 comment
#53 - fixed read_crv issue where polars was reading from previously opened …
Pull Request -
State: closed - Opened by sinmojito 11 months ago
- 1 comment
#52 - Adding tutorial images corresponding to v2.9.36 and updating tutorial accordingly.
Pull Request -
State: closed - Opened by sinmojito 11 months ago
- 1 comment
#51 - fixed the wsl2 issue where gui redirects to localhost instead of 0.0.0.0
Pull Request -
State: closed - Opened by sinmojito 11 months ago
- 1 comment
#50 - [BUG] Accessing GUI via 0.0.0.0 on WSL2
Issue -
State: closed - Opened by sinmojito 11 months ago
- 6 comments
Labels: bug
#49 - galaxy wrapper
Pull Request -
State: closed - Opened by beatrizmclm about 1 year ago
#48 - [Feature] Small changes of GUI for uploading file and annotation button
Issue -
State: closed - Opened by marfantyk about 1 year ago
- 3 comments
Labels: enhancement
#47 - [Feature] one button for applying filters
Issue -
State: closed - Opened by marfantyk about 1 year ago
- 3 comments
Labels: enhancement
#46 - [BUG] dependent to a reporter modules get replaced by other modules if you choose more than one reporter
Issue -
State: closed - Opened by marfantyk about 1 year ago
- 2 comments
Labels: bug
#45 - [BUG] problems with gene filters
Issue -
State: closed - Opened by antonkulaga about 1 year ago
- 2 comments
Labels: bug
#44 - Snakemake wrapper for ov run
Pull Request -
State: closed - Opened by beatrizmclm over 1 year ago
- 1 comment
#43 - Oakvar CWL workflow
Pull Request -
State: closed - Opened by gehadkamel over 1 year ago
- 6 comments
#42 - add first wdl workflow
Pull Request -
State: closed - Opened by gehadkamel over 1 year ago
- 8 comments
#41 - several users with empty login names are possible [BUG]
Issue -
State: closed - Opened by antonkulaga over 1 year ago
- 3 comments
Labels: bug
#40 - please change the icon for manually entering variants [Feature]
Issue -
State: closed - Opened by antonkulaga over 1 year ago
- 1 comment
Labels: enhancement
#39 - show dependencies of dependencies in selected modules[Feature]
Issue -
State: open - Opened by antonkulaga over 1 year ago
- 4 comments
Labels: enhancement
#38 - submission does not clean up [BUG]
Issue -
State: closed - Opened by antonkulaga over 1 year ago
- 1 comment
Labels: bug
#37 - [BUG] Error on "ov run exampleinput -a clinvar -t vcf"
Issue -
State: open - Opened by lopatich over 1 year ago
- 2 comments
Labels: bug
#36 - [Feature] there should be separate Log for reporters as well as some way to display progress
Issue -
State: closed - Opened by antonkulaga over 1 year ago
- 2 comments
Labels: enhancement
#35 - [BUG] Errors on "ov system setup" command
Issue -
State: closed - Opened by marfantyk almost 2 years ago
- 13 comments
Labels: bug
#34 - [BUG] polyphen2:2022.09.19 does not update
Issue -
State: closed - Opened by antonkulaga almost 2 years ago
- 3 comments
Labels: bug
#33 - [BUG] no dependency control for reporters
Issue -
State: closed - Opened by antonkulaga almost 2 years ago
- 6 comments
Labels: bug
#32 - make updating less confusing
Issue -
State: closed - Opened by antonkulaga almost 2 years ago
- 4 comments
Labels: bug
#31 - g.vcf support
Issue -
State: open - Opened by antonkulaga almost 2 years ago
- 7 comments
Labels: enhancement
#30 - Error during setup in excelreporter
Issue -
State: closed - Opened by Alex-Karmazin almost 2 years ago
- 1 comment
Labels: bug
#29 - OakVar do not uninstalling completely
Issue -
State: closed - Opened by Alex-Karmazin almost 2 years ago
- 4 comments
Labels: bug
#28 - Duplicating rows when us annotators
Issue -
State: closed - Opened by Alex-Karmazin almost 2 years ago
- 12 comments
Labels: bug
#27 - Pagenation not loading data
Issue -
State: closed - Opened by Alex-Karmazin almost 2 years ago
- 3 comments
Labels: bug
#26 - [Feature] hot reload
Issue -
State: open - Opened by antonkulaga almost 2 years ago
- 3 comments
Labels: enhancement
#25 - No drop-down list in the filter tab
Issue -
State: closed - Opened by OlgaBorysova almost 2 years ago
- 4 comments
Labels: bug
#24 - feature request [can be done in collaboration with us]: support for PRS modules
Issue -
State: open - Opened by antonkulaga almost 2 years ago
- 1 comment
Labels: enhancement
#23 - feature request: function to group by genotype
Issue -
State: open - Opened by antonkulaga almost 2 years ago
- 1 comment
Labels: enhancement
#22 - feature request: presets for annotators and reporters
Issue -
State: closed - Opened by antonkulaga almost 2 years ago
- 2 comments
Labels: enhancement
#21 - feature request: use of pagination instead of 100K variants limit
Issue -
State: closed - Opened by antonkulaga almost 2 years ago
- 2 comments
Labels: enhancement
#20 - feature request: the tab with available reports should be displayed in annotators results
Issue -
State: closed - Opened by antonkulaga almost 2 years ago
- 9 comments
Labels: enhancement
#19 - feature request: adding new annotator to already annotated vcf
Issue -
State: open - Opened by antonkulaga almost 2 years ago
- 3 comments
Labels: enhancement
#18 - feature request: autodetect option for reference genome
Issue -
State: closed - Opened by antonkulaga almost 2 years ago
- 2 comments
Labels: enhancement
#17 - Problem updating dbsnp
Issue -
State: closed - Opened by Alex-Karmazin almost 2 years ago
- 4 comments
Labels: enhancement
#16 - Problem occurred while setting up the system
Issue -
State: closed - Opened by lnalinaf almost 2 years ago
- 22 comments
Labels: bug
#15 - JSON Error in stacktrace
Issue -
State: closed - Opened by Alex-Karmazin almost 2 years ago
- 6 comments
Labels: bug
#14 - improvement of UI loading speed (minor issue)
Issue -
State: closed - Opened by antonkulaga almost 2 years ago
- 12 comments
#13 - minor ui bug with system update
Issue -
State: closed - Opened by antonkulaga almost 2 years ago
- 4 comments
Labels: bug
#12 - Error during processing vcf file.
Issue -
State: closed - Opened by Alex-Karmazin almost 2 years ago
- 29 comments
Labels: bug
#11 - 'list' object has no attribute 'rstrip' in multiple modules
Issue -
State: closed - Opened by antonkulaga almost 2 years ago
- 12 comments
Labels: bug
#10 - oakvar.exceptions.BadFormatError: error: All samples have the reference genotype.
Issue -
State: closed - Opened by antonkulaga almost 2 years ago
- 12 comments
#9 - minor bug with non-standard home folders
Issue -
State: closed - Opened by antonkulaga almost 2 years ago
- 4 comments
Labels: bug
#8 - NameError: name 'stage_handler' is not defined
Issue -
State: closed - Opened by antonkulaga almost 2 years ago
- 7 comments
#7 - no favicon.ico error in wcravat.log
Issue -
State: closed - Opened by Alex-Karmazin almost 2 years ago
- 1 comment
#6 - Error on starting job
Issue -
State: closed - Opened by Alex-Karmazin almost 2 years ago
- 3 comments
Labels: bug
#5 - ov gui leads to crashes
Issue -
State: closed - Opened by antonkulaga almost 2 years ago
- 4 comments
#4 - ov system setup can be blocked by email not coming
Issue -
State: closed - Opened by antonkulaga almost 2 years ago
- 4 comments
#3 - After setup there is no module webapps
Issue -
State: closed - Opened by Alex-Karmazin about 2 years ago
- 6 comments
#1 - No cravat-system.yml file and packagedir is not defined errors during installation
Issue -
State: closed - Opened by Alex-Karmazin about 2 years ago
- 5 comments