rki-mf1/covsonar issues and pull requests

#29 - readme updated - [merged]

Issue - State: closed - Opened by silenus092 almost 4 years ago - 3 comments
Labels: gitlab merge request

#28 - Fixes - [merged]

Issue - State: closed - Opened by silenus092 almost 4 years ago - 1 comment
Labels: gitlab merge request

#27 - Restore sequence from file does not work

Issue - State: closed - Opened by silenus092 almost 3 years ago

#26 - Exact match for ANY character in match condtion.

Issue - State: closed - Opened by silenus092 almost 3 years ago - 1 comment
Labels: feature request

#25 - SQL not working properly - Searching Any Mutation

Issue - State: closed - Opened by silenus092 about 3 years ago - 3 comments
Labels: bug, improvement

#24 - We need to talk about deletions ...

Issue - State: closed - Opened by silenus092 about 3 years ago - 1 comment

#23 - Incorrect syntax in where clause (Query NOT on date column is not working)

Issue - State: closed - Opened by silenus092 about 3 years ago
Labels: bug

#22 - build database fails due to non-unique entries in fasta

Issue - State: closed - Opened by silenus092 about 3 years ago - 2 comments
Labels: feature request

#21 - include date of submission in output

Issue - State: closed - Opened by silenus092 about 3 years ago

#20 - CovSonar fails when reference gff includes features from reverse strand

Issue - State: closed - Opened by silenus092 about 3 years ago

#19 - Mutation search returns less sequences than previous search

Issue - State: closed - Opened by silenus092 about 3 years ago - 1 comment
Labels: bug

#18 - Get results for any AA substitution does not work

Issue - State: closed - Opened by silenus092 over 3 years ago - 1 comment

#17 - Suggestion: Option to get results for parent and all child lineages

Issue - State: closed - Opened by silenus092 over 3 years ago - 2 comments

#16 - If multiple --include are used and the first fails all fail

Issue - State: closed - Opened by silenus092 over 3 years ago - 6 comments
Labels: bug

#15 - frameshifts stay undetected

Issue - State: closed - Opened by silenus092 over 3 years ago - 2 comments
Labels: bug

#14 - Installation under Mac fails due to unsolvable conda dependencies

Issue - State: closed - Opened by silenus092 over 3 years ago - 3 comments
Labels: improvement

#13 - feature wishlist (please add)

Issue - State: closed - Opened by silenus092 over 3 years ago - 15 comments
Labels: feature request

#12 - ModuleNotFoundError: No module named 'Bio'

Issue - State: closed - Opened by silenus092 over 3 years ago - 1 comment

#11 - --count not working

Issue - State: closed - Opened by silenus092 over 3 years ago - 1 comment
Labels: bug

#10 - minimap2 as alternative alignment tool

Issue - State: closed - Opened by silenus092 over 3 years ago - 3 comments
Labels: feature request

#9 - Add DESH information about RNDM and SUSPECT sampling

Issue - State: closed - Opened by silenus092 over 3 years ago - 1 comment
Labels: feature request

#8 - Allow selection by numerical value in metadata

Issue - State: closed - Opened by silenus092 almost 4 years ago - 3 comments
Labels: feature request

#7 - Add option to allow file of accessions as input for sonar restore

Issue - State: closed - Opened by silenus092 almost 4 years ago - 2 comments
Labels: feature request

#6 - Adding option to dump whole database to tsv file

Issue - State: closed - Opened by silenus092 almost 4 years ago - 1 comment
Labels: feature request

#5 - Adding to existing table fails when using new or temp cache

Issue - State: closed - Opened by silenus092 almost 4 years ago - 1 comment
Labels: bug

#4 - Remove rowid from tables where not necessary

Issue - State: closed - Opened by silenus092 almost 4 years ago - 1 comment
Labels: improvement

#3 - deletion missed for one nucleotide gap

Issue - State: closed - Opened by silenus092 almost 4 years ago - 4 comments
Labels: bug

#2 - Add additional ORFs