Ecosyste.ms: Issues

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GitHub / rietho/IPO issues and pull requests

#73 - error during oprimisation

Issue - State: open - Opened by samuelbertrand44 over 1 year ago - 3 comments

#72 - Too much time for optimization!!

Issue - State: open - Opened by arpita-007 about 2 years ago - 6 comments

#71 - checks are failing due to mzData

Issue - State: closed - Opened by rietho over 2 years ago - 5 comments

#70 - Fix/mz data removal

Pull Request - State: closed - Opened by sneumann over 2 years ago - 6 comments

#69 - Build error due to removed mzData report

Issue - State: closed - Opened by sneumann over 2 years ago

#68 - User manual for IPO

Issue - State: closed - Opened by HuanLab almost 3 years ago

#67 - sampleGroup error... I think.

Issue - State: open - Opened by Phylloxera about 4 years ago

#66 - Issues running IPO on cluster with 15 files

Issue - State: open - Opened by adelabriere over 4 years ago - 2 comments

#65 - definition of grouping optimization score leads to poor results in some cases

Issue - State: closed - Opened by tew42 almost 5 years ago - 1 comment

#63 - Workers / Slaves numbers for IPO on clusters

Issue - State: open - Opened by ThomasPouplin about 5 years ago

#62 - std::bad_alloc error

Issue - State: open - Opened by danagibbon over 5 years ago - 2 comments

#61 - xcmsSetStatistic() may produce model with suboptimal results

Issue - State: open - Opened by rickhelmus about 6 years ago - 2 comments
Labels: enhancement, help wanted

#60 - Error in object@backend$getAllScanHeaderInfo()

Issue - State: open - Opened by ghost over 6 years ago - 1 comment

#59 - Determining the number of xcms runs and DoEs for an optimization run

Issue - State: open - Opened by etrh over 6 years ago - 1 comment

#58 - stop worker failed, Error in serialize, error writing to connection

Issue - State: open - Opened by etrh over 6 years ago - 1 comment

#57 - optimizeXcmsSet expects parameters that are not even used by and related to centWave

Issue - State: closed - Opened by etrh over 6 years ago - 2 comments

#56 - IPO optimized parameter showed peak data insertion problem

Issue - State: open - Opened by Titan100 over 6 years ago - 2 comments

#55 - ways to improve IPO performance

Issue - State: open - Opened by blueskypie over 6 years ago - 5 comments

#54 - Chromatographic peak detection failed for all files

Issue - State: closed - Opened by ghost almost 7 years ago - 3 comments

#53 - Error when plotting

Issue - State: closed - Opened by sneumann almost 7 years ago - 5 comments

#52 - How to optimize the centWave parameter prefilter two values

Issue - State: closed - Opened by ljsjwly about 7 years ago - 2 comments

#51 - Option to disable plotting

Issue - State: closed - Opened by rietho about 7 years ago
Labels: enhancement

#50 - Error with calcPPS function

Issue - State: closed - Opened by lauzikaite about 7 years ago - 11 comments

#49 - Parallelisation issue (?)

Issue - State: closed - Opened by lauzikaite over 7 years ago - 11 comments

#47 - Last IPO version (1.7.5) before Bioconductor release

Issue - State: closed - Opened by sneumann over 7 years ago - 1 comment

#46 - Step/increment issue

Issue - State: closed - Opened by Brainpiercing almost 8 years ago - 3 comments

#45 - DoE plotting error

Issue - State: closed - Opened by Mexxxx almost 8 years ago - 3 comments

#44 - nSlaves deprecated, update to BiocParallel

Issue - State: closed - Opened by jorainer almost 8 years ago - 16 comments

#43 - Error in .local(object, ...) : Dimensions of profile matrices do not match !

Issue - State: closed - Opened by mheiser-md about 8 years ago - 6 comments

#42 - MacOSX: Different results for xcmsSet.centWave.mzdiff

Issue - State: closed - Opened by lecorguille over 8 years ago - 5 comments

#41 - Update install guide

Issue - State: closed - Opened by mhische-md over 8 years ago - 1 comment

#40 - Unloading snow namespace

Issue - State: closed - Opened by mheiser-md over 8 years ago - 2 comments

#39 - Optimization time issue

Issue - State: closed - Opened by Titan100 over 8 years ago - 21 comments

#38 - Design: return vales of optimizeXcmsSet() and optimizeRetGroup()

Issue - State: open - Opened by sneumann over 8 years ago - 1 comment
Labels: enhancement

#37 - IPO error message for UseMethod("sendData")

Issue - State: closed - Opened by leichtle over 8 years ago - 3 comments

#36 - optimizeRetGroup ignoring retcorMethod="loess"

Issue - State: closed - Opened by sneumann over 8 years ago - 5 comments

#35 - Uses FORK instead of PSOCK R clusters on Linux/Mac

Pull Request - State: closed - Opened by pcm32 almost 9 years ago - 7 comments

#34 - Installing IPO error

Issue - State: closed - Opened by jjkellogg almost 9 years ago - 2 comments

#33 - Error "checkForRemoteErrors(val) : 2 nodes produced errors" when using IPO

Issue - State: closed - Opened by jamesrco almost 9 years ago - 7 comments

#32 - Unexpected problems with the netCDF and mzXML files

Issue - State: closed - Opened by Jiaqc about 9 years ago - 1 comment

#31 - Problems installing IPO in R-3.2.2 version

Issue - State: closed - Opened by Jiaqc about 9 years ago

#30 - Unable install any packages in R-3.2.2 version

Issue - State: closed - Opened by anupb08 about 9 years ago - 20 comments

#29 - MakeCluster(nSlaves, type = "PSOCK")

Issue - State: closed - Opened by tobigithub about 9 years ago - 1 comment

#28 - MakeCluster(nSlaves, type = "PSOCK")

Issue - State: closed - Opened by tobigithub about 9 years ago - 5 comments

#27 - Unpredictive behaviour with library(Rmpi) installed

Issue - State: closed - Opened by tobigithub about 9 years ago - 2 comments

#26 - Lipidomics set creates warnings about profile mode

Issue - State: closed - Opened by tobigithub about 9 years ago - 1 comment

#25 - writeRScript executes code within function?

Issue - State: closed - Opened by tobigithub about 9 years ago - 3 comments

#24 - Image folder for WIKI pages

Issue - State: closed - Opened by tobigithub about 9 years ago - 4 comments

#22 - BiocCheck: man page

Issue - State: closed - Opened by sneumann about 9 years ago

#21 - BiocCheck: vignette

Issue - State: closed - Opened by sneumann about 9 years ago

#20 - IPO in R32 bit vs R64 bit

Issue - State: closed - Opened by tobigithub about 9 years ago - 2 comments

#19 - Number of slaves hard coded?

Issue - State: closed - Opened by tobigithub about 9 years ago - 1 comment

#18 - Update README.md

Pull Request - State: closed - Opened by tobigithub about 9 years ago - 1 comment

#17 - package ‘rsm’ is not available (for R version 3.2.2)

Issue - State: closed - Opened by tobigithub over 9 years ago - 1 comment

#16 - IPO under Windows XP requires R3.03

Issue - State: closed - Opened by tobigithub over 9 years ago - 1 comment

#15 - 'PSOCK' unknown cluster typee

Issue - State: closed - Opened by M-R-JONES over 9 years ago - 2 comments

#14 - IPO clean install under Windows "stringi.rdb" missing

Issue - State: closed - Opened by tobigithub over 9 years ago - 1 comment

#13 - Better place for IPO WIKI and manual

Issue - State: closed - Opened by tobigithub over 9 years ago - 1 comment

#12 - IPO test fail with R3.2.0 (2015-04-16)

Issue - State: closed - Opened by tobigithub over 9 years ago - 6 comments

#11 - Error using IPO with mzR 2.3.1

Issue - State: closed - Opened by ekemmler over 9 years ago - 6 comments

#10 - Problems installing IPO

Issue - State: closed - Opened by jheaton1 over 9 years ago - 7 comments

#9 - Exponent for GRTS as ?

Issue - State: closed - Opened by sneumann over 9 years ago - 2 comments
Labels: enhancement

#8 - Allow to select the retcor() method

Issue - State: closed - Opened by sneumann over 9 years ago - 3 comments
Labels: enhancement

#7 - UnitTest failure

Issue - State: closed - Opened by sneumann over 9 years ago - 3 comments

#6 - Error in lm.fit() when optimising group/retcor

Issue - State: closed - Opened by sneumann over 9 years ago - 2 comments

#5 - limit optimizeRetGroup() to group.density

Issue - State: closed - Opened by sneumann over 9 years ago - 2 comments
Labels: enhancement

#4 - Meaningful colnames for calcPPS() result

Issue - State: closed - Opened by sneumann over 9 years ago - 1 comment

#3 - error upon peak picking optimisation

Issue - State: closed - Opened by sneumann over 9 years ago - 4 comments

#2 - Update documentation to match code

Pull Request - State: closed - Opened by sneumann almost 10 years ago

#1 - mkdir subdir used with getwd() prevents use of absolute paths

Issue - State: closed - Opened by sneumann almost 10 years ago - 1 comment