Ecosyste.ms: Issues

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GitHub / richelbilderbeek/raket issues and pull requests

#48 - Simplify PBD taxon names

Issue - State: open - Opened by richelbilderbeek about 5 years ago

#47 - Add 'update_raket'

Issue - State: open - Opened by richelbilderbeek over 5 years ago

#46 - Add 'collect_pbd_params'

Issue - State: open - Opened by richelbilderbeek over 5 years ago

#45 - Test parameter set should be short

Issue - State: closed - Opened by richelbilderbeek over 5 years ago - 1 comment

#44 - Create sampling parameters set

Issue - State: open - Opened by richelbilderbeek over 5 years ago

#43 - Check for Peregrine friendly filenames

Issue - State: closed - Opened by richelbilderbeek over 5 years ago - 2 comments

#41 - Create test parameter set input files

Issue - State: closed - Opened by richelbilderbeek over 5 years ago

#40 - Create general parameter set input files

Issue - State: open - Opened by richelbilderbeek over 5 years ago

#39 - Create general parameter set

Issue - State: open - Opened by richelbilderbeek over 5 years ago

#38 - Put files in the right folders

Issue - State: closed - Opened by richelbilderbeek over 5 years ago - 2 comments

#37 - Be sure about number of mutations in twin alignment

Issue - State: closed - Opened by richelbilderbeek over 5 years ago - 1 comment

#36 - No NA's in est_evidences table

Issue - State: closed - Opened by richelbilderbeek over 5 years ago - 1 comment

#35 - system call failed: Cannot allocate memory

Issue - State: open - Opened by richelbilderbeek over 5 years ago

#34 - Safeguard against CBS

Issue - State: closed - Opened by richelbilderbeek over 5 years ago - 1 comment

#33 - Set crown age

Issue - State: closed - Opened by richelbilderbeek over 5 years ago - 1 comment

#32 - Call pirouette from raket

Issue - State: closed - Opened by richelbilderbeek about 6 years ago - 2 comments

#31 - Create general parameter set file with razzo file setup

Issue - State: closed - Opened by richelbilderbeek about 6 years ago - 1 comment

#30 - 2_create_input_files_sampling

Issue - State: closed - Opened by richelbilderbeek about 6 years ago - 3 comments

#29 - 6_to_long

Issue - State: closed - Opened by richelbilderbeek about 6 years ago - 1 comment

#28 - 10_create_fig_1

Issue - State: open - Opened by richelbilderbeek about 6 years ago - 2 comments

#27 - 4_create_nltt_files

Issue - State: closed - Opened by richelbilderbeek about 6 years ago - 1 comment

#26 - 3_create_posterior_files

Issue - State: closed - Opened by richelbilderbeek about 6 years ago - 2 comments

#25 - 2_create_input_files_general

Issue - State: closed - Opened by richelbilderbeek about 6 years ago - 1 comment

#24 - Remove rkt_ prefix

Issue - State: closed - Opened by richelbilderbeek about 6 years ago - 1 comment

#23 - mcbette: calculate weight for models

Issue - State: closed - Opened by richelbilderbeek about 6 years ago - 1 comment

#22 - Problems installing Rtools on R 3.5.0 on Windows 7

Issue - State: closed - Opened by richelbilderbeek over 6 years ago - 6 comments

#21 - Clock model and site model usage

Issue - State: closed - Opened by richelbilderbeek over 6 years ago - 1 comment

#20 - Are sequential seeds correlated?

Issue - State: closed - Opened by richelbilderbeek over 6 years ago - 1 comment

#19 - It takes too long to create the full sampling data set

Issue - State: closed - Opened by richelbilderbeek over 6 years ago - 2 comments

#17 - Create CODE_OF_CONDUCT.md

Pull Request - State: closed - Opened by richelbilderbeek over 6 years ago

#16 - Fix test

Issue - State: closed - Opened by richelbilderbeek almost 7 years ago - 3 comments

#15 - Fix build error

Issue - State: closed - Opened by richelbilderbeek almost 7 years ago - 11 comments

#14 - Fixed broken tests

Pull Request - State: closed - Opened by J-Damhuis almost 7 years ago - 1 comment

#13 - Improve and test pbd_expected_n_extant

Issue - State: closed - Opened by richelbilderbeek almost 7 years ago - 1 comment

#12 - For which parameter settings are less than 1000 taxons expected?

Issue - State: closed - Opened by richelbilderbeek almost 7 years ago - 3 comments

#11 - Prerequisite: phangorn::simSeq is correct

Issue - State: closed - Opened by richelbilderbeek almost 7 years ago - 1 comment

#10 - Prerequisite: after discarding a burn-in of 10%, 1000 values must remain

Issue - State: closed - Opened by richelbilderbeek almost 7 years ago - 1 comment

#9 - Prerequisite: can create such a big data frame

Issue - State: closed - Opened by richelbilderbeek almost 7 years ago - 3 comments

#8 - Prerequisite: consistent sampling

Issue - State: closed - Opened by richelbilderbeek almost 7 years ago - 3 comments

#7 - Prerequisite: babette provides for constant known strict clock rate

Issue - State: closed - Opened by richelbilderbeek almost 7 years ago - 1 comment

#6 - Prerequisite: data frame in long form plottable as violin plot

Issue - State: closed - Opened by richelbilderbeek almost 7 years ago - 2 comments

#5 - Prerequisite: data frame can be converted to long form

Issue - State: closed - Opened by richelbilderbeek almost 7 years ago

#4 - Prerequisite: PBD with Inf as speciation completion rate

Issue - State: closed - Opened by richelbilderbeek almost 7 years ago - 2 comments

#3 - Exceeded step memory limit

Issue - State: closed - Opened by richelbilderbeek almost 7 years ago - 5 comments

#2 - Peregrine issue: file.exists(beast_log_filename) is not TRUE

Issue - State: closed - Opened by richelbilderbeek almost 7 years ago - 1 comment

#1 - Peregrine issue: cannot remove file 'beast2.xml'

Issue - State: closed - Opened by richelbilderbeek almost 7 years ago - 3 comments