rhysnewell/rosella issues and pull requests

#61 - add option for minimap2 -x lr:hq

Issue - State: open - Opened by xvazquezc about 1 month ago

#60 - Dev

Pull Request - State: closed - Opened by rhysnewell about 1 month ago

#59 - fix: fixes #58

Pull Request - State: closed - Opened by rhysnewell about 1 month ago

#58 - thread 'main' panicked at src/refine/refinery.rs:115:33

Issue - State: closed - Opened by Aveglia about 1 month ago - 2 comments

#56 - bins with 1 contig if contig names are not identical between fasta and coverage file

Issue - State: open - Opened by michoug 3 months ago - 1 comment

#55 - fix: add min contig count checker to refine

Pull Request - State: closed - Opened by rhysnewell 4 months ago

#54 - Empty Array During Refinement

Issue - State: open - Opened by schmigle 7 months ago - 9 comments

#53 - Rosella recover output (bins vs. refined bins)

Issue - State: open - Opened by Rridley7 8 months ago

#52 - question about the refine module of rosella

Issue - State: open - Opened by quliping 9 months ago - 4 comments

#51 - New Outputs!

Issue - State: open - Opened by aljazdzy 10 months ago - 2 comments

#50 - Deadlock fix

Pull Request - State: closed - Opened by rhysnewell 11 months ago

#49 - error trying to use coverage info from a table

Issue - State: open - Opened by jvollme 12 months ago - 3 comments

#48 - fix: n_contigs not correctly counting

Pull Request - State: closed - Opened by rhysnewell 12 months ago

#47 - shapeerror

Issue - State: closed - Opened by wwood 12 months ago - 7 comments

#46 - Usage docs improperly formatted

Issue - State: open - Opened by rhysnewell about 1 year ago

#45 - feat(dev): update coverm engine and docs creations add workflows

Pull Request - State: closed - Opened by rhysnewell about 1 year ago

#44 - v0.5.0

Pull Request - State: closed - Opened by rhysnewell about 1 year ago

#43 - v0.5.0-prerelease

Pull Request - State: closed - Opened by rhysnewell about 1 year ago

#42 - rosella.yml specifies numpy <=1.21 but numba requires numpy >= 1.22

Issue - State: closed - Opened by jvollme about 1 year ago - 2 comments

#41 - Error installing flight according to READ.ME

Issue - State: closed - Opened by jvollme about 1 year ago - 3 comments

#40 - failed flight process

Issue - State: closed - Opened by DeaconOfBiology about 1 year ago - 7 comments

#39 - Generating Coverage Values with Rosella

Issue - State: closed - Opened by aljazdzy over 1 year ago - 17 comments

#38 - Rosella Installation dependent on Repository Cloning

Issue - State: closed - Opened by ka-block over 1 year ago - 3 comments

#37 - Flight failing when generating combinations of tids: empty tid list due to contig names not matching in assembly and coverage file

Issue - State: closed - Opened by gabrieleghiotto over 1 year ago - 22 comments

#36 - Flight error

Issue - State: closed - Opened by greenmna over 1 year ago - 7 comments

#35 - Flight error - skbio linked?

Issue - State: closed - Opened by willem-stock almost 2 years ago - 7 comments

#34 - Flight error.

Issue - State: closed - Opened by Valentin-Bio almost 2 years ago - 4 comments

#33 - Error when running flight process

Issue - State: closed - Opened by mmac0026 almost 2 years ago - 6 comments

#32 - ERROR coverm::bam_generator] Error when running mapping process.

Issue - State: closed - Opened by Valentin-Bio almost 2 years ago - 2 comments

#31 - thread 'main' panicked at 'range start index 3 out of range for slice of length 2', library/core/src/slice/index.rs:52:

Issue - State: closed - Opened by Jolvii85 almost 2 years ago - 12 comments

#30 - Rosella recover flight status error

Issue - State: closed - Opened by Rridley7 about 2 years ago - 9 comments

#29 - package conflicts

Issue - State: closed - Opened by janfelix about 2 years ago - 2 comments

#28 - Rosella run questions

Issue - State: closed - Opened by Valentin-Bio-zz about 2 years ago - 10 comments

#27 - Compilation problem

Issue - State: closed - Opened by dpryan79 about 2 years ago - 5 comments

#26 - scikit-bio dependency

Issue - State: closed - Opened by jvollme about 2 years ago - 4 comments

#25 - UMAP and HDBSCAN alternatives

Issue - State: open - Opened by jianshu93 over 2 years ago - 7 comments

#24 - wiki for rosella refine

Issue - State: closed - Opened by Thexiyang over 2 years ago - 2 comments

#23 - annembed for UMAP

Issue - State: closed - Opened by jianshu93 over 2 years ago - 1 comment

#22 - Feature request: specify binners to exclude in Recover

Issue - State: closed - Opened by StevenJRobbins over 2 years ago - 1 comment

#21 - Bioconda installation missing a lot of packages

Issue - State: closed - Opened by michoug over 2 years ago - 2 comments

#20 - version: update version to try and bump bioconda build

Pull Request - State: closed - Opened by rhysnewell almost 3 years ago

#19 - feat: Adding github release action activated on addition of new versi…

Pull Request - State: closed - Opened by rhysnewell almost 3 years ago

#18 - Dev

Pull Request - State: closed - Opened by rhysnewell almost 3 years ago

#17 - feat: added refine submodule for further refining bins from any binni…

Pull Request - State: closed - Opened by rhysnewell almost 3 years ago