rhysnewell/aviary issues and pull requests

#50 - README suggestions

Issue - State: closed - Opened by wwood over 2 years ago - 2 comments
Labels: documentation

#49 - complete not supported yet?

Issue - State: closed - Opened by wwood over 2 years ago - 3 comments
Labels: documentation, enhancement

#48 - pigz = 2.4

Issue - State: closed - Opened by wwood over 2 years ago - 2 comments
Labels: bug

#47 - Feature requests--flag MAGs with circular contigs and use CheckM output format 2 for final stats

Issue - State: closed - Opened by StevenJRobbins over 2 years ago - 3 comments
Labels: enhancement, good first issue

#46 - Installation of GTDB-Tk environment: nothing provides boost >=1.70.0...needed by fastani-1.32-he1c1bb9_0

Issue - State: closed - Opened by julianzaugg over 2 years ago - 2 comments

#45 - Semibin fully impleneted in Dev branch?

Issue - State: closed - Opened by julianzaugg over 2 years ago - 9 comments

#44 - rules checkm_... assume bins have been found?

Issue - State: closed - Opened by julianzaugg over 2 years ago - 3 comments

#43 - Flight / skbio error. numpy.ndarray size changed, may indicate binary incompatibility

Issue - State: closed - Opened by julianzaugg over 2 years ago - 16 comments

#42 - Add --threads to circlator

Pull Request - State: closed - Opened by sternp over 2 years ago

#41 - Revert "Update circlator yaml"

Pull Request - State: closed - Opened by rhysnewell over 2 years ago

#40 - Update circlator yaml

Pull Request - State: closed - Opened by sternp over 2 years ago - 5 comments

#39 - Medaka. KeyError: b'contig_1' Failed to stitch consensus chunks.

Issue - State: closed - Opened by sternp over 2 years ago

#38 - install

Issue - State: closed - Opened by Thexiyang almost 3 years ago - 4 comments

#37 - Update GTDB-Tk to version 2.0.0

Issue - State: closed - Opened by julianzaugg almost 3 years ago - 4 comments

#36 - aviary recover with short reads

Issue - State: closed - Opened by cifuj almost 3 years ago - 10 comments

#35 - Dev

Pull Request - State: closed - Opened by rhysnewell almost 3 years ago

#34 - Option to provide high quality nanopore reads to flye with --nano-hq, default to --nano-raw.

Pull Request - State: closed - Opened by julianzaugg almost 3 years ago - 5 comments

#33 - catch bug for cluster where taxonomy throws error if no bac or arch f…

Pull Request - State: closed - Opened by rhysnewell about 3 years ago

#32 - Dev

Pull Request - State: closed - Opened by rhysnewell about 3 years ago

#31 - Dev

Pull Request - State: closed - Opened by rhysnewell about 3 years ago

#30 - misspecified input for rule gtdbtk

Issue - State: closed - Opened by julianzaugg over 3 years ago - 1 comment

#29 - Moving DAS Tool output may break other rules when binning

Issue - State: closed - Opened by julianzaugg over 3 years ago

#28 - Galah dereplicate output should go to bins/final_bins

Pull Request - State: closed - Opened by julianzaugg over 3 years ago - 2 comments

#27 - Working with large datasets and mapping reads: Missing SAM header / truncated file / no SQ lines in the header

Issue - State: closed - Opened by julianzaugg over 3 years ago - 2 comments

#26 - Maxbin failing to bin contigs causes whole pipeline to fail

Issue - State: closed - Opened by julianzaugg over 3 years ago - 1 comment