Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / rhysnewell/Lorikeet issues and pull requests
#60 - bam filtering does not change dN/dS values
Issue -
State: open - Opened by jianshu93 4 months ago
- 1 comment
#59 - evolve not available
Issue -
State: open - Opened by jianshu93 4 months ago
- 1 comment
#58 - aarch64/aarm64 macOS compiling error
Issue -
State: closed - Opened by jianshu93 4 months ago
- 6 comments
#57 - docs: Add build_docs.py, add docker draft, update release script.
Pull Request -
State: open - Opened by wwood 4 months ago
- 1 comment
#56 - Dev
Pull Request -
State: closed - Opened by rhysnewell 12 months ago
#55 - Lower mem usage
Pull Request -
State: closed - Opened by rhysnewell 12 months ago
#54 - Doco fixes
Pull Request -
State: closed - Opened by wwood over 1 year ago
#53 - Dev to main
Pull Request -
State: closed - Opened by rhysnewell over 1 year ago
#52 - Installation problem
Issue -
State: open - Opened by gabrieleghiotto over 1 year ago
- 1 comment
#51 - Fix VCF annotations
Pull Request -
State: closed - Opened by rhysnewell over 1 year ago
#50 - Compilation fix
Pull Request -
State: closed - Opened by wwood over 1 year ago
#49 - Merge 'Dev' in to "master"
Pull Request -
State: closed - Opened by rhysnewell over 1 year ago
#48 - Bug using split-bams with parallel genomes
Issue -
State: closed - Opened by AroneyS over 1 year ago
- 2 comments
#47 - cli: Allow --profile very-fast.
Pull Request -
State: closed - Opened by wwood over 1 year ago
- 1 comment
#46 - Catching dev up to master branch
Pull Request -
State: closed - Opened by rhysnewell over 1 year ago
#45 - build(deps): update bstr requirement from ^0.2.17 to ^1.2.0
Pull Request -
State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies
#44 - Lorikeet runtime
Issue -
State: closed - Opened by AroneyS almost 2 years ago
- 3 comments
#43 - build(deps): update bstr requirement from ^0.2.17 to ^1.1.0
Pull Request -
State: closed - Opened by dependabot[bot] almost 2 years ago
- 1 comment
Labels: dependencies
#42 - build(deps): update bio requirement from 0.41.0 to 1.1.0
Pull Request -
State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies
#41 - build(deps): update env_logger requirement from 0.6 to 0.10
Pull Request -
State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies
#40 - build(deps): update strum requirement from ^0.17.1 to ^0.24.1
Pull Request -
State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies
#39 - dN/dS calculation with provided gene calls
Issue -
State: closed - Opened by AroneyS about 2 years ago
- 1 comment
#38 - build(deps): update mathru requirement from 0.9.1 to 0.14.0
Pull Request -
State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies
#37 - build(deps): update bio requirement from 0.41.0 to 1.0.0
Pull Request -
State: closed - Opened by dependabot[bot] about 2 years ago
- 1 comment
Labels: dependencies
#36 - build(deps): update statrs requirement from 0.13 to 0.16
Pull Request -
State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies
#35 - build(deps): update strum_macros requirement from ^0.17.1 to ^0.24.3
Pull Request -
State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies
#34 - build(deps): update hashlink requirement from ^0.7 to ^0.8
Pull Request -
State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies
#33 - build(deps): update itertools requirement from ^0.8 to ^0.10
Pull Request -
State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies
#32 - build(deps): update bio requirement from 0.41.0 to 0.42.0
Pull Request -
State: closed - Opened by dependabot[bot] about 2 years ago
- 1 comment
Labels: dependencies
#31 - build(deps): update ordered-float requirement from 1 to 3
Pull Request -
State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies
#30 - build(deps): update env_logger requirement from 0.6 to 0.9
Pull Request -
State: closed - Opened by dependabot[bot] about 2 years ago
- 1 comment
Labels: dependencies
#29 - build(deps): update mathru requirement from 0.9.1 to 0.13.0
Pull Request -
State: closed - Opened by dependabot[bot] about 2 years ago
- 1 comment
Labels: dependencies
#28 - build(deps): update bstr requirement from ^0.2.17 to ^1.0.1
Pull Request -
State: closed - Opened by dependabot[bot] about 2 years ago
- 1 comment
Labels: dependencies
#27 - build(deps): update pyo3 requirement from ^0.16.5 to ^0.17.1
Pull Request -
State: closed - Opened by dependabot[bot] about 2 years ago
- 1 comment
Labels: dependencies
#26 - Dev
Pull Request -
State: closed - Opened by rhysnewell almost 3 years ago
#25 - Dev
Pull Request -
State: closed - Opened by rhysnewell almost 3 years ago
#24 - Update README installation instructions
Pull Request -
State: closed - Opened by StefaanVerwimp about 3 years ago
- 1 comment
#23 - Merging GKL-rs and setting use of AVX to default
Pull Request -
State: closed - Opened by rhysnewell about 3 years ago
#22 - Dev
Pull Request -
State: closed - Opened by rhysnewell about 3 years ago
#21 - Generate Rust bindings to Intel GKL for SmithWatermanAligner and PairHMM
Issue -
State: closed - Opened by rhysnewell about 3 years ago
- 21 comments
Labels: enhancement, help wanted
#20 - updates to linkage algorithm
Pull Request -
State: closed - Opened by rhysnewell about 3 years ago
#19 - Dev
Pull Request -
State: closed - Opened by rhysnewell about 3 years ago
#18 - changes that were missed in previous commit
Pull Request -
State: closed - Opened by rhysnewell about 3 years ago
#17 - added bam splitting for parallel genomes, also now read original refe…
Pull Request -
State: closed - Opened by rhysnewell about 3 years ago
- 1 comment
#16 - various bug fixes
Pull Request -
State: closed - Opened by rhysnewell about 3 years ago
#15 - Fixing bugs in call
Pull Request -
State: closed - Opened by rhysnewell about 3 years ago
#14 - Dev
Pull Request -
State: closed - Opened by rhysnewell about 3 years ago
#13 - add release action
Pull Request -
State: closed - Opened by rhysnewell about 3 years ago
#12 - Dev
Pull Request -
State: closed - Opened by rhysnewell about 3 years ago
#11 - updating flight
Pull Request -
State: closed - Opened by rhysnewell about 3 years ago
#10 - Dev
Pull Request -
State: closed - Opened by rhysnewell about 3 years ago
#9 - Dev
Pull Request -
State: closed - Opened by rhysnewell about 3 years ago
#8 - adding working features-vcf flag for force calling variants. Updated …
Pull Request -
State: closed - Opened by rhysnewell about 3 years ago
#7 - Dev: Re-implementation of GATK HaplotypeCaller in Rust
Pull Request -
State: closed - Opened by rhysnewell about 3 years ago
#6 - Install Issue
Issue -
State: closed - Opened by rwolfe45 over 3 years ago
- 2 comments
#5 - Vt floating point exception caused by samtools 1.10
Issue -
State: closed - Opened by rhysnewell about 4 years ago
Labels: bug
#4 - Update install procedures.
Pull Request -
State: closed - Opened by wwood about 4 years ago
- 1 comment
#3 - Freebayes fails on reference files with many contigs
Issue -
State: closed - Opened by rhysnewell over 4 years ago
- 1 comment
Labels: bug
#2 - Cargo.toml: default-run to lorikeet.
Pull Request -
State: closed - Opened by wwood over 4 years ago
- 1 comment
#1 - Using rayon alongside mutex can cause random deadlocks
Issue -
State: closed - Opened by rhysnewell over 4 years ago
Labels: bug, enhancement