Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / rhysnewell/Lorikeet issues and pull requests

#56 - Dev

Pull Request - State: closed - Opened by rhysnewell 7 months ago

#55 - Lower mem usage

Pull Request - State: closed - Opened by rhysnewell 7 months ago

#54 - Doco fixes

Pull Request - State: closed - Opened by wwood 11 months ago

#53 - Dev to main

Pull Request - State: closed - Opened by rhysnewell 12 months ago

#52 - Installation problem

Issue - State: open - Opened by gabrieleghiotto about 1 year ago - 1 comment

#51 - Fix VCF annotations

Pull Request - State: closed - Opened by rhysnewell about 1 year ago

#50 - Compilation fix

Pull Request - State: closed - Opened by wwood about 1 year ago

#49 - Merge 'Dev' in to "master"

Pull Request - State: closed - Opened by rhysnewell about 1 year ago

#48 - Bug using split-bams with parallel genomes

Issue - State: closed - Opened by AroneyS about 1 year ago - 2 comments

#47 - cli: Allow --profile very-fast.

Pull Request - State: closed - Opened by wwood about 1 year ago - 1 comment

#46 - Catching dev up to master branch

Pull Request - State: closed - Opened by rhysnewell over 1 year ago

#45 - build(deps): update bstr requirement from ^0.2.17 to ^1.2.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#44 - Lorikeet runtime

Issue - State: closed - Opened by AroneyS over 1 year ago - 3 comments

#43 - build(deps): update bstr requirement from ^0.2.17 to ^1.1.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#42 - build(deps): update bio requirement from 0.41.0 to 1.1.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#41 - build(deps): update env_logger requirement from 0.6 to 0.10

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#40 - build(deps): update strum requirement from ^0.17.1 to ^0.24.1

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#39 - dN/dS calculation with provided gene calls

Issue - State: closed - Opened by AroneyS over 1 year ago - 1 comment

#38 - build(deps): update mathru requirement from 0.9.1 to 0.14.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#37 - build(deps): update bio requirement from 0.41.0 to 1.0.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#36 - build(deps): update statrs requirement from 0.13 to 0.16

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#35 - build(deps): update strum_macros requirement from ^0.17.1 to ^0.24.3

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#34 - build(deps): update hashlink requirement from ^0.7 to ^0.8

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#33 - build(deps): update itertools requirement from ^0.8 to ^0.10

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#32 - build(deps): update bio requirement from 0.41.0 to 0.42.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#31 - build(deps): update ordered-float requirement from 1 to 3

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#30 - build(deps): update env_logger requirement from 0.6 to 0.9

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#29 - build(deps): update mathru requirement from 0.9.1 to 0.13.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#28 - build(deps): update bstr requirement from ^0.2.17 to ^1.0.1

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#27 - build(deps): update pyo3 requirement from ^0.16.5 to ^0.17.1

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#26 - Dev

Pull Request - State: closed - Opened by rhysnewell over 2 years ago

#25 - Dev

Pull Request - State: closed - Opened by rhysnewell over 2 years ago

#24 - Update README installation instructions

Pull Request - State: closed - Opened by StefaanVerwimp over 2 years ago - 1 comment

#23 - Merging GKL-rs and setting use of AVX to default

Pull Request - State: closed - Opened by rhysnewell over 2 years ago

#22 - Dev

Pull Request - State: closed - Opened by rhysnewell over 2 years ago

#21 - Generate Rust bindings to Intel GKL for SmithWatermanAligner and PairHMM

Issue - State: closed - Opened by rhysnewell over 2 years ago - 21 comments
Labels: enhancement, help wanted

#20 - updates to linkage algorithm

Pull Request - State: closed - Opened by rhysnewell over 2 years ago

#19 - Dev

Pull Request - State: closed - Opened by rhysnewell over 2 years ago

#18 - changes that were missed in previous commit

Pull Request - State: closed - Opened by rhysnewell over 2 years ago

#17 - added bam splitting for parallel genomes, also now read original refe…

Pull Request - State: closed - Opened by rhysnewell over 2 years ago - 1 comment

#16 - various bug fixes

Pull Request - State: closed - Opened by rhysnewell over 2 years ago

#15 - Fixing bugs in call

Pull Request - State: closed - Opened by rhysnewell over 2 years ago

#14 - Dev

Pull Request - State: closed - Opened by rhysnewell over 2 years ago

#13 - add release action

Pull Request - State: closed - Opened by rhysnewell over 2 years ago

#12 - Dev

Pull Request - State: closed - Opened by rhysnewell over 2 years ago

#11 - updating flight

Pull Request - State: closed - Opened by rhysnewell over 2 years ago

#10 - Dev

Pull Request - State: closed - Opened by rhysnewell over 2 years ago

#9 - Dev

Pull Request - State: closed - Opened by rhysnewell over 2 years ago

#7 - Dev: Re-implementation of GATK HaplotypeCaller in Rust

Pull Request - State: closed - Opened by rhysnewell almost 3 years ago

#6 - Install Issue

Issue - State: closed - Opened by rwolfe45 about 3 years ago - 2 comments

#5 - Vt floating point exception caused by samtools 1.10

Issue - State: closed - Opened by rhysnewell almost 4 years ago
Labels: bug

#4 - Update install procedures.

Pull Request - State: closed - Opened by wwood almost 4 years ago - 1 comment

#3 - Freebayes fails on reference files with many contigs

Issue - State: closed - Opened by rhysnewell almost 4 years ago - 1 comment
Labels: bug

#2 - Cargo.toml: default-run to lorikeet.

Pull Request - State: closed - Opened by wwood almost 4 years ago - 1 comment

#1 - Using rayon alongside mutex can cause random deadlocks

Issue - State: closed - Opened by rhysnewell about 4 years ago
Labels: bug, enhancement