Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / rhpvorderman/sequali issues and pull requests

#97 - Add example reports

Issue - State: closed - Opened by rhpvorderman 9 months ago - 2 comments

#96 - ValueError: not enough values to unpack

Issue - State: closed - Opened by OZTaekOppa 11 months ago - 6 comments

#96 - ValueError: not enough values to unpack

Issue - State: closed - Opened by OZTaekOppa 11 months ago - 6 comments

#95 - Add nanopore barcodes as contaminations

Pull Request - State: closed - Opened by rhpvorderman 11 months ago

#95 - Add nanopore barcodes as contaminations

Pull Request - State: closed - Opened by rhpvorderman 11 months ago

#94 - Multi-sample support and statistics

Issue - State: closed - Opened by marcelm 12 months ago - 9 comments

#93 - Release 0.4.1

Issue - State: closed - Opened by rhpvorderman 12 months ago

#93 - Release 0.4.1

Issue - State: closed - Opened by rhpvorderman 12 months ago

#92 - Release 0.4.1

Pull Request - State: closed - Opened by rhpvorderman 12 months ago

#92 - Release 0.4.1

Pull Request - State: closed - Opened by rhpvorderman 12 months ago

#91 - Fix issue 90

Pull Request - State: closed - Opened by rhpvorderman 12 months ago

#91 - Fix issue 90

Pull Request - State: closed - Opened by rhpvorderman 12 months ago

#90 - IndexError if a later read was sequenced earlier

Issue - State: closed - Opened by marcelm 12 months ago - 3 comments

#90 - IndexError if a later read was sequenced earlier

Issue - State: closed - Opened by marcelm 12 months ago - 3 comments

#89 - Move documentation to readthedocs

Issue - State: closed - Opened by rhpvorderman 12 months ago

#88 - _qc.pyi stub is not up to date.

Issue - State: closed - Opened by rhpvorderman 12 months ago

#88 - _qc.pyi stub is not up to date.

Issue - State: closed - Opened by rhpvorderman 12 months ago

#87 - Modern package layout centered around pyproject.toml and setuptools_scm

Issue - State: closed - Opened by rhpvorderman 12 months ago - 2 comments

#87 - Modern package layout centered around pyproject.toml and setuptools_scm

Issue - State: closed - Opened by rhpvorderman 12 months ago - 2 comments

#86 - MultiQC integration

Issue - State: closed - Opened by rhpvorderman 12 months ago - 2 comments

#86 - MultiQC integration

Issue - State: closed - Opened by rhpvorderman 12 months ago - 2 comments

#85 - Release 0.4.0

Pull Request - State: closed - Opened by rhpvorderman 12 months ago

#85 - Release 0.4.0

Pull Request - State: closed - Opened by rhpvorderman 12 months ago

#84 - Release 0.4.0

Issue - State: closed - Opened by rhpvorderman 12 months ago

#84 - Release 0.4.0

Issue - State: closed - Opened by rhpvorderman 12 months ago

#82 - Add a version command

Pull Request - State: closed - Opened by rhpvorderman 12 months ago

#82 - Add a version command

Pull Request - State: closed - Opened by rhpvorderman 12 months ago

#81 - Crash on empty read with metadata

Issue - State: closed - Opened by marcelm 12 months ago

#80 - IndexError with single input read

Issue - State: closed - Opened by marcelm 12 months ago - 2 comments

#80 - IndexError with single input read

Issue - State: closed - Opened by marcelm 12 months ago - 2 comments

#79 - Add a --version command-line option

Issue - State: closed - Opened by marcelm 12 months ago

#79 - Add a --version command-line option

Issue - State: closed - Opened by marcelm 12 months ago

#77 - Release 0.3.0

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#77 - Release 0.3.0

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#76 - Release 0.3.0

Issue - State: closed - Opened by rhpvorderman about 1 year ago

#76 - Release 0.3.0

Issue - State: closed - Opened by rhpvorderman about 1 year ago

#75 - Better fingerprinting for nanopore duplication estimation

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago - 1 comment

#75 - Better fingerprinting for nanopore duplication estimation

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago - 1 comment

#74 - Require latest version of pygal to prevent errors when installing

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#74 - Require latest version of pygal to prevent errors when installing

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#73 - Better adapter detection for nanopore probes.

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago - 1 comment

#73 - Better adapter detection for nanopore probes.

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago - 1 comment

#72 - Require pygal 3.0.3

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#72 - Require pygal 3.0.3

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#71 - Fingerprint might not work very well for nanopore reads

Issue - State: closed - Opened by rhpvorderman about 1 year ago

#71 - Fingerprint might not work very well for nanopore reads

Issue - State: closed - Opened by rhpvorderman about 1 year ago

#69 - Current adapter searcher does not work well for nanopore adapters

Issue - State: closed - Opened by rhpvorderman about 1 year ago - 4 comments

#68 - Pygal has some issues with proper installation.

Issue - State: closed - Opened by rhpvorderman about 1 year ago - 2 comments

#67 - Suggestion: Add a link to the homepage/repo to the report

Issue - State: closed - Opened by marcelm about 1 year ago

#66 - Run several test on complete application to catch errors.

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago - 1 comment

#65 - Crash on empty read

Issue - State: closed - Opened by marcelm about 1 year ago

#64 - Crash on empty input

Issue - State: closed - Opened by marcelm about 1 year ago

#63 - Prevent zero divide errors

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago - 9 comments

#62 - ZeroDivisionError

Issue - State: closed - Opened by marcelm about 1 year ago - 1 comment

#61 - Change the default fragment length

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#60 - Release 0.2.0

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#59 - Release 0.2.0

Issue - State: closed - Opened by rhpvorderman about 1 year ago

#58 - Make wording in Sequence Overrepresentation module more consistent.

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#56 - Fix tuple unpacking bug by checking the number of parts first

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago - 1 comment

#55 - Better styling for the report and CLI

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#53 - Make threads configurable

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago - 1 comment

#52 - make threads configurable through the CLI

Issue - State: closed - Opened by rhpvorderman about 1 year ago

#51 - Fix windows build bug

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#50 - Release 0.1.0

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#49 - Test on 3.12

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#48 - Release 0.1.0

Issue - State: closed - Opened by rhpvorderman about 1 year ago

#47 - Deploy and test linux builds by default with ssse3 flag enabled.

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#46 - Graphpolish

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#45 - Sample overrepresented sequences evenly across the file.

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#44 - Fix inline error in msvc

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#43 - Use a smarter read finger print for deduplication estimation

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#42 - Find overrepresented sequences using fragments

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#41 - Proper deduplication estimate

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#40 - Add asan test environment and fix several memory leaks.

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#39 - Polish the report

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#38 - Restructure metrics arrays

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#37 - Require xopen version that allows python threads

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago - 1 comment

#36 - Tags

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#35 - Use readinto rather than read method

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#34 - Add SSSE3 routine for decoding bam sequences

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#33 - Add a BAM file parser to sequali

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#32 - Greatly speed up adapter counter by using out of order execution

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#31 - Add SSE2 routine for tiles

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#29 - Always use staging

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#28 - Add graphs for Nanopore

Pull Request - State: closed - Opened by rhpvorderman about 1 year ago

#26 - Refactor reporting

Pull Request - State: closed - Opened by rhpvorderman over 1 year ago

#25 - Add a NanoStats module

Pull Request - State: closed - Opened by rhpvorderman over 1 year ago

#22 - Add base quality distribution, N content plot

Pull Request - State: closed - Opened by rhpvorderman over 1 year ago