Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / rezakj/iCellR issues and pull requests

#37 - an error message - running the run.knetl

Issue - State: open - Opened by MavroLucic 9 months ago - 1 comment

#36 - data.scale question

Issue - State: open - Opened by gianfilippo about 1 year ago - 2 comments

#34 - gg.cor produces incorrect plots

Issue - State: open - Opened by rohitrrj about 2 years ago

#33 - Seeking help to create different types of plots

Issue - State: closed - Opened by Rashidul1990 over 2 years ago - 3 comments

#32 - no plots available for ADT data when using ADT + HTO

Issue - State: open - Opened by m3lorra almost 3 years ago

#31 - Transform my iCellR object into seurat？

Issue - State: open - Opened by pteromysvolans almost 3 years ago - 1 comment

#30 - 'replacement has 1 row, data has 0' when creating iCellR object

Issue - State: open - Opened by lucas-bishop about 3 years ago - 3 comments

#29 - How to normalize data with single condition?

Issue - State: open - Opened by bioysu over 3 years ago - 1 comment

#28 - Method for gene-gene correlations

Issue - State: open - Opened by Yale73 over 3 years ago - 2 comments

#27 - Can I integrate data with iCellR?

Issue - State: closed - Opened by Midsummer723 over 3 years ago - 4 comments

#26 - Transform my seurat object into iCellR

Issue - State: open - Opened by pabloatria18 almost 4 years ago - 5 comments

#25 - VDJ analysis: can I use filtered.contig? Error when I run clono.plot

Issue - State: closed - Opened by france-hub almost 4 years ago - 3 comments

#24 - conds.to.plot in gene.plot not functional

Issue - State: open - Opened by joybarrett08 almost 4 years ago

#23 - Labelling cells with cluster

Issue - State: closed - Opened by nicholascwho about 4 years ago - 4 comments

#22 - TPM instead of count data & no conditions

Issue - State: closed - Opened by nicholascwho about 4 years ago - 2 comments

#21 - converting old iCellR object to new object

Issue - State: closed - Opened by joybarrett08 about 4 years ago - 1 comment

#20 - Ploting colonotypes

Issue - State: closed - Opened by crushseven-7 about 4 years ago - 4 comments

#19 - convert seurat object to iCellR object

Issue - State: closed - Opened by gt7901b about 4 years ago - 3 comments

#18 - Error: cannot allocate vector of size 6288.3 Gb

Issue - State: closed - Opened by jajcobyang about 4 years ago - 1 comment

#17 - pseudotime.tree

Issue - State: closed - Opened by Yale73 over 4 years ago - 2 comments

#16 - Can not run the cluster.plot and the run.diff.exp

Issue - State: closed - Opened by Yale73 over 4 years ago - 5 comments

#15 - Can not run findMarkers

Issue - State: closed - Opened by Yale73 over 4 years ago - 6 comments

#14 - how to produce a coverage corrected matrix

Issue - State: closed - Opened by JLiLab over 4 years ago - 2 comments

#13 - load10x failed

Issue - State: closed - Opened by jajcobyang over 4 years ago - 1 comment

#12 - Memory management problem

Issue - State: closed - Opened by ehcw111 over 4 years ago - 2 comments

#11 - VDJ data loading

Issue - State: closed - Opened by jsmoon4 over 4 years ago - 3 comments

#10 - Minor proposal on line 09

Pull Request - State: closed - Opened by kant over 4 years ago

#9 - Minor fix on line 16

Pull Request - State: closed - Opened by kant over 4 years ago

#8 - Minor fixes on lines 384 & 427 & 633 & 1103

Pull Request - State: closed - Opened by kant over 4 years ago

#7 - qc.stats() missing value where TRUE/FALSE needed

Issue - State: closed - Opened by xf78 almost 5 years ago - 1 comment

#6 - Coloring not working for TSNE and UMAP plots for option color by = "Cluster"

Issue - State: closed - Opened by IkjotSidhu almost 5 years ago - 4 comments

#5 - Mutual Nearest Neighbor Batch correction not working

Issue - State: closed - Opened by IkjotSidhu almost 5 years ago - 3 comments

#4 - Possible to cluster based on ADT data alone?

Issue - State: closed - Opened by cpcook1 almost 5 years ago - 1 comment

#3 - iCellR object fails to function when using multiple samples with same condition

Issue - State: closed - Opened by IkjotSidhu about 5 years ago - 3 comments

#2 - data input from other object

Issue - State: closed - Opened by zehualilab about 5 years ago - 5 comments
Labels: question

#1 - could not generate interactive figures.

Issue - State: closed - Opened by weiliuyuan over 5 years ago - 4 comments
Labels: question