Ecosyste.ms: Issues

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GitHub / renozao/NMF issues and pull requests

#188 - NMF in parallel mode runs only in two cores.

Issue - State: open - Opened by lincj1994 about 2 months ago - 1 comment

#187 - argument "force" is missing, with no default

Issue - State: open - Opened by tjfinney 4 months ago

#186 - Imperfect Fit of Full-Rank NMF

Issue - State: open - Opened by jacobdornEcon 4 months ago

#185 - Poor Approximation by SNMF/R

Issue - State: open - Opened by jacobdornEcon 4 months ago

#182 - Failed to fix basis.

Issue - State: open - Opened by TingyanCN 7 months ago

#180 - ERROR in compute NMF method 'brunet'

Issue - State: open - Opened by Donatella93 9 months ago - 3 comments

#176 - Met an error

Issue - State: open - Opened by WangJingwen21 about 1 year ago

#175 - Canonical Version

Issue - State: open - Opened by mfansler over 1 year ago

#174 - Install.extras?

Issue - State: open - Opened by inofechm over 1 year ago - 2 comments

#172 - Italicize annotation label

Issue - State: open - Opened by dchiu911 almost 2 years ago

#171 - ggplot is not loading anymore

Issue - State: open - Opened by victoria7411 about 2 years ago

#170 - Getting get_Random.seed error

Issue - State: open - Opened by suhasaii over 2 years ago - 1 comment

#169 - Error: operator is invalid for atomic vectors

Issue - State: open - Opened by kgeyer over 2 years ago - 1 comment

#168 - verbose function in nmf()

Issue - State: open - Opened by grimwoo almost 3 years ago - 1 comment

#167 - Error running nmf

Issue - State: open - Opened by suminwei2772 over 3 years ago - 1 comment

#166 - How to combine different types of variable?

Issue - State: open - Opened by zhangshouwei309194 over 3 years ago

#164 - how to calculate H matrix based on a given NMF model

Issue - State: closed - Opened by ray101023 over 3 years ago

#163 - Package check fails on defunct LINPACK argument for svd()

Issue - State: closed - Opened by renozao over 3 years ago

#162 - Man page examples are broken

Issue - State: closed - Opened by renozao over 3 years ago

#161 - Import/exports for coef and .DollarNames not setup correctly

Issue - State: closed - Opened by renozao over 3 years ago

#160 - The input matrix

Issue - State: open - Opened by honghh2018 about 4 years ago - 2 comments

#159 - Could you please export the function of ccRamp?

Issue - State: closed - Opened by xlucpu about 4 years ago

#158 - Error in match_atrack(object, data)

Issue - State: open - Opened by BenxiaHu over 4 years ago

#157 - Memory Allocation

Issue - State: open - Opened by ediriwas over 4 years ago - 1 comment

#156 - Error in SetMatrixElements

Issue - State: open - Opened by BenxiaHu over 4 years ago - 3 comments

#155 - Fix typo "Connectiviy" -> "Connectivity"

Pull Request - State: open - Opened by russHyde over 4 years ago

#154 - issue installing renozao/NMF on R 4.0

Issue - State: closed - Opened by Hermandez over 4 years ago

#152 - how to use the .parameters to pass arguments?

Issue - State: open - Opened by JianghuiDu over 4 years ago

#151 - using my own objective with an existing method

Issue - State: open - Opened by ChristelSwift over 4 years ago

#150 - CRAN Package will not install

Issue - State: open - Opened by ColeWunderlich over 4 years ago - 6 comments

#147 - NMF with binary data?

Issue - State: open - Opened by nandobonf over 4 years ago

#146 - Install the NMF 0.23.0

Issue - State: closed - Opened by zh-Bian over 4 years ago - 2 comments

#144 - Prepare for CRAN update

Issue - State: open - Opened by renozao almost 5 years ago - 2 comments

#143 - Now requires Biobase?

Issue - State: open - Opened by kenahoo almost 5 years ago - 1 comment

#142 - Fixed basis example

Issue - State: open - Opened by lima1 over 5 years ago - 2 comments

#140 - Cannot run new NMF 0.22

Issue - State: closed - Opened by WuyangFF95 over 5 years ago - 1 comment

#139 - Feature Scores

Issue - State: closed - Opened by wiw4002 over 5 years ago

#138 - Can't install NMF due to rngtools package

Issue - State: closed - Opened by Hasani2015 over 5 years ago - 1 comment

#137 - Error: NMF::nmf - Input matrix x contains at least one null or NA-filled row.

Issue - State: open - Opened by SamGG over 5 years ago - 2 comments

#134 - cexRow and cexCol now work to adjust scale fontsize

Pull Request - State: closed - Opened by nathancday over 5 years ago

#133 - Example: Error in cons != .consold : non-conformable arrays

Issue - State: closed - Opened by durrantmm over 5 years ago - 6 comments

#131 - Row and Col annotations italics

Issue - State: open - Opened by marcomtzmtz over 5 years ago

#130 - aheatmap() - border_color for annCol

Issue - State: open - Opened by clayfos almost 6 years ago

#129 - Colored annotation from column names?

Issue - State: open - Opened by KasperH2 almost 6 years ago

#127 - Error in str_out(i) : object 'i' not found

Issue - State: closed - Opened by ShixiangWang almost 6 years ago - 3 comments

#126 - functions to test different ranks and algorithms,extract results info

Pull Request - State: open - Opened by ccpalu about 6 years ago

#125 - Combination of breaks and colors does not work

Issue - State: open - Opened by mhlinder about 6 years ago - 4 comments

#124 - Error when estimating rank

Issue - State: open - Opened by Gandalfy about 6 years ago

#123 - non-conformable arrays with hand-written digits data

Issue - State: open - Opened by kaurao about 6 years ago

#122 - Fix: Cast from matrix to avoid warning in nndsvd

Pull Request - State: open - Opened by richardbeare about 6 years ago

#121 - Aheatmap annColors parameter running out of colors

Issue - State: open - Opened by jamesrhowe about 6 years ago - 1 comment

#119 - How to use nmf for symmetric matrix

Issue - State: open - Opened by yutongo over 6 years ago

#118 - how to extract basismap and coefmap

Issue - State: open - Opened by GuidoLeoni over 6 years ago - 1 comment

#117 - aheatmap clusters differently from version 0.20.6 to 0.21.0

Issue - State: closed - Opened by AmyOlex over 6 years ago - 1 comment

#116 - Parallelization problems

Issue - State: open - Opened by hildebra over 6 years ago

#115 - Error in nmf with multiple ranks

Issue - State: open - Opened by whitleyo over 6 years ago

#114 - calling NMF::nmf without library(NMF)

Issue - State: open - Opened by gdkrmr over 6 years ago - 1 comment

#113 - Warning message when loading NMF v0.22

Issue - State: open - Opened by hardychris over 6 years ago

#112 - support sparse matrix for NMF

Issue - State: open - Opened by Xiaojieqiu over 6 years ago

#111 - Adds support for viridis color palettes in aheatmap

Pull Request - State: closed - Opened by khughitt over 6 years ago

#110 - How to get a matrix gene weights in NMF

Issue - State: closed - Opened by Gandalfy over 6 years ago - 1 comment

#109 - No residual track

Issue - State: open - Opened by kiranvpaul over 6 years ago - 1 comment

#108 - Please use release tags

Issue - State: open - Opened by tillea over 6 years ago

#107 - Error when run aheatmap

Issue - State: closed - Opened by XLuHouston over 6 years ago - 1 comment

#106 - NMF removed from CRAN

Issue - State: open - Opened by rekado over 6 years ago - 2 comments

#105 - aheatmap - can't resize row and column labels

Issue - State: open - Opened by ghost almost 7 years ago - 6 comments

#104 - NMF Question - Input samples as rows instead of columns?

Issue - State: open - Opened by lajoimat almost 7 years ago - 1 comment

#103 - NMF single cell data - extractFeature is NA

Issue - State: open - Opened by dylanmr almost 7 years ago - 1 comment

#102 - Error when running NMF in R 3.4.2

Issue - State: open - Opened by HaidYi almost 7 years ago

#101 - Error when running NMF

Issue - State: open - Opened by Aashilbatavia almost 7 years ago - 1 comment

#100 - Using NMF with large matrices

Issue - State: open - Opened by capsampension almost 7 years ago

#99 - cexCol and cexRow not working

Issue - State: open - Opened by kviljoen about 7 years ago

#98 - R segmentation error in NMF

Issue - State: closed - Opened by kiranvpaul about 7 years ago - 1 comment

#97 - snmf/l algorithm, smoothness and sparseness parameters

Issue - State: closed - Opened by Iftix about 7 years ago - 1 comment

#95 - NMF on gene expression data

Issue - State: open - Opened by mbenezra about 7 years ago

#94 - aheatmap - Row labels overlaps with colour scale

Issue - State: open - Opened by kviljoen about 7 years ago

#93 - Connectivity matrix based on rows (features)?

Issue - State: open - Opened by sdoerstling over 7 years ago - 1 comment

#92 - Error when running default algorithm multiple times

Issue - State: open - Opened by thuggins316 over 7 years ago

#91 - Problem loading NMF

Issue - State: closed - Opened by Benfeitas over 7 years ago

#90 - error in rank comparison computations

Issue - State: open - Opened by Frank73 over 7 years ago - 8 comments

#89 - Error with sparse matrix

Issue - State: closed - Opened by sdoerstling over 7 years ago - 1 comment