rendeirolab/lazyslide issues and pull requests

#43 - Progress bar for remote WSIs miscalculating file size and download rate

Issue - State: closed - Opened by afrendeiro 5 months ago - 1 comment
Labels: bug

#43 - Progress bar for remote WSIs miscalculating file size and download rate

Issue - State: closed - Opened by afrendeiro 5 months ago - 1 comment
Labels: bug

#42 - Design of WSI data structure

Issue - State: closed - Opened by Mr-Milk 5 months ago - 3 comments
Labels: question

#42 - Design of WSI data structure

Issue - State: closed - Opened by Mr-Milk 5 months ago - 3 comments
Labels: question

#41 - [New Feaeture] Support Multi-Devices inference for `tl.feature_extraction`

Issue - State: closed - Opened by Mr-Milk 5 months ago - 1 comment

#41 - [New Feaeture] Support Multi-Devices inference for `tl.feature_extraction`

Issue - State: closed - Opened by Mr-Milk 5 months ago - 1 comment

#40 - Fix #39: add dynamic versioning with versioningit

Pull Request - State: closed - Opened by afrendeiro 6 months ago

#40 - Fix #39: add dynamic versioning with versioningit

Pull Request - State: closed - Opened by afrendeiro 6 months ago

#39 - Installation and versioning

Issue - State: closed - Opened by afrendeiro 6 months ago - 1 comment

#39 - Installation and versioning

Issue - State: closed - Opened by afrendeiro 6 months ago - 1 comment

#38 - [New Feature] Aggregation of multiple slides

Issue - State: closed - Opened by Mr-Milk 7 months ago - 3 comments

#38 - [New Feature] Aggregation of multiple slides

Issue - State: closed - Opened by Mr-Milk 7 months ago - 3 comments

#37 - Slide-level analysis demo

Issue - State: open - Opened by afrendeiro 7 months ago
Labels: documentation, good first issue

#37 - Slide-level analysis demo

Issue - State: open - Opened by afrendeiro 7 months ago
Labels: documentation, good first issue

#36 - Processing pipeline

Issue - State: open - Opened by afrendeiro 7 months ago
Labels: enhancement

#36 - Processing pipeline

Issue - State: open - Opened by afrendeiro 7 months ago
Labels: enhancement

#35 - Failing annotation of tiles with text features

Issue - State: open - Opened by afrendeiro 7 months ago
Labels: bug

#35 - Failing annotation of tiles with text features

Issue - State: open - Opened by afrendeiro 7 months ago
Labels: bug

#34 - Normalization of tiles and scaling of features extracted

Issue - State: closed - Opened by afrendeiro 7 months ago - 1 comment
Labels: bug

#34 - Normalization of tiles and scaling of features extracted

Issue - State: closed - Opened by afrendeiro 7 months ago - 1 comment
Labels: bug

#33 - [Docs] Improve darkmode code cell visibility

Issue - State: closed - Opened by afrendeiro 7 months ago - 1 comment
Labels: documentation

#33 - [Docs] Improve darkmode code cell visibility

Issue - State: closed - Opened by afrendeiro 7 months ago - 1 comment
Labels: documentation

#32 - [CLI] `typer` dependency missing for CLI use

Issue - State: closed - Opened by afrendeiro 7 months ago
Labels: bug

#32 - [CLI] `typer` dependency missing for CLI use

Issue - State: closed - Opened by afrendeiro 7 months ago
Labels: bug

#31 - Rename `master` branch to `main`

Issue - State: closed - Opened by afrendeiro 8 months ago

#31 - Rename `master` branch to `main`

Issue - State: closed - Opened by afrendeiro 8 months ago

#30 - [Container] A docker image to launch lazyslide

Issue - State: open - Opened by Mr-Milk 9 months ago

#30 - [Container] A docker image to launch lazyslide

Issue - State: open - Opened by Mr-Milk 9 months ago

#29 - [CLI] A CLI interface to launch lazyslide

Issue - State: closed - Opened by Mr-Milk 9 months ago

#29 - [CLI] A CLI interface to launch lazyslide

Issue - State: closed - Opened by Mr-Milk 9 months ago

#28 - [Workflow] A nextflow script to process multiple slides

Issue - State: closed - Opened by Mr-Milk 9 months ago

#28 - [Workflow] A nextflow script to process multiple slides

Issue - State: closed - Opened by Mr-Milk 9 months ago

#27 - Tests

Issue - State: open - Opened by Mr-Milk 9 months ago

#27 - Tests

Issue - State: open - Opened by Mr-Milk 9 months ago

#26 - Documentation

Issue - State: open - Opened by Mr-Milk 9 months ago

#26 - Documentation

Issue - State: open - Opened by Mr-Milk 9 months ago

#25 - [Tool] Cell segmentation

Issue - State: closed - Opened by Mr-Milk 9 months ago - 2 comments

#25 - [Tool] Cell segmentation

Issue - State: closed - Opened by Mr-Milk 9 months ago - 2 comments

#24 - Torch DataLoaders

Issue - State: open - Opened by Mr-Milk 9 months ago

#24 - Torch DataLoaders

Issue - State: open - Opened by Mr-Milk 9 months ago

#23 - [Tool] Color normalization

Issue - State: closed - Opened by Mr-Milk 9 months ago

#23 - [Tool] Color normalization

Issue - State: closed - Opened by Mr-Milk 9 months ago

#22 - [get] Get tissue masks/contours

Issue - State: closed - Opened by Mr-Milk 9 months ago

#22 - [get] Get tissue masks/contours

Issue - State: closed - Opened by Mr-Milk 9 months ago

#21 - [Tool] Quantify geometry features for tissue instances

Issue - State: closed - Opened by Mr-Milk 9 months ago

#21 - [Tool] Quantify geometry features for tissue instances

Issue - State: closed - Opened by Mr-Milk 9 months ago

#20 - [Tool] User model for feature extration

Issue - State: closed - Opened by Mr-Milk 9 months ago

#20 - [Tool] User model for feature extration

Issue - State: closed - Opened by Mr-Milk 9 months ago

#19 - [Tool] New Scorers

Issue - State: open - Opened by Mr-Milk 9 months ago

#19 - [Tool] New Scorers

Issue - State: open - Opened by Mr-Milk 9 months ago

#18 - [IO] Handle spatialdata writing for user

Issue - State: closed - Opened by Mr-Milk 9 months ago - 1 comment

#18 - [IO] Handle spatialdata writing for user

Issue - State: closed - Opened by Mr-Milk 9 months ago - 1 comment

#17 - [IO] Support for remote WSI

Issue - State: closed - Opened by Mr-Milk 9 months ago
Labels: enhancement

#17 - [IO] Support for remote WSI

Issue - State: closed - Opened by Mr-Milk 9 months ago
Labels: enhancement

#16 - Add scorer feature

Issue - State: closed - Opened by Mr-Milk about 1 year ago

#16 - Add scorer feature

Issue - State: closed - Opened by Mr-Milk about 1 year ago

#15 - Plotting rendering improvement with `QuadMesh`

Issue - State: closed - Opened by Mr-Milk about 1 year ago
Labels: enhancement

#15 - Plotting rendering improvement with `QuadMesh`

Issue - State: closed - Opened by Mr-Milk about 1 year ago
Labels: enhancement

#14 - Tile Table

Issue - State: closed - Opened by Mr-Milk about 1 year ago
Labels: enhancement

#14 - Tile Table

Issue - State: closed - Opened by Mr-Milk about 1 year ago
Labels: enhancement

#13 - Cell/ nucleus image cropping

Issue - State: closed - Opened by eabila about 1 year ago - 1 comment
Labels: enhancement

#13 - Cell/ nucleus image cropping

Issue - State: closed - Opened by eabila about 1 year ago - 1 comment
Labels: enhancement

#12 - Eager import only for main features

Issue - State: closed - Opened by Mr-Milk about 1 year ago

#12 - Eager import only for main features

Issue - State: closed - Opened by Mr-Milk about 1 year ago

#11 - Random shuffling tiles_coords

Issue - State: closed - Opened by eabila about 1 year ago

#11 - Random shuffling tiles_coords

Issue - State: closed - Opened by eabila about 1 year ago

#10 - Lazy read coordinations in H5

Issue - State: closed - Opened by Mr-Milk about 1 year ago - 1 comment
Labels: enhancement

#10 - Lazy read coordinations in H5

Issue - State: closed - Opened by Mr-Milk about 1 year ago - 1 comment
Labels: enhancement

#9 - Speed benchmark

Issue - State: closed - Opened by afrendeiro about 1 year ago
Labels: enhancement

#9 - Speed benchmark

Issue - State: closed - Opened by afrendeiro about 1 year ago
Labels: enhancement

#8 - [Backend:vips] Faster random access of small tiles using fetch

Issue - State: closed - Opened by Mr-Milk about 1 year ago
Labels: enhancement

#8 - [Backend:vips] Faster random access of small tiles using fetch

Issue - State: closed - Opened by Mr-Milk about 1 year ago
Labels: enhancement

#7 - Code style

Issue - State: closed - Opened by afrendeiro about 1 year ago - 2 comments
Labels: question

#6 - Add wsi.to_dataset(); Add wsi.to_dataloader; Add wsi.inference() prototypes

Pull Request - State: open - Opened by afrendeiro about 1 year ago

#5 - Bug using openslide backend

Issue - State: closed - Opened by afrendeiro about 1 year ago
Labels: bug

#4 - Error creating Dataset without segmenting tissue and tiling WSI

Issue - State: closed - Opened by afrendeiro about 1 year ago
Labels: bug

#3 - Error creating tiles without specifying mpp

Issue - State: closed - Opened by afrendeiro about 1 year ago
Labels: bug

#2 - Add convenience functions to create Torch objects from WSI directly

Issue - State: closed - Opened by afrendeiro about 1 year ago
Labels: enhancement

#1 - Allow WSI to be instantiated from a URL

Issue - State: closed - Opened by afrendeiro about 1 year ago
Labels: enhancement

GitHub / rendeirolab/lazyslide issues and pull requests