Ecosyste.ms: Issues

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GitHub / reactome/CuratorTool issues and pull requests

#55 - Feature/update tracker physical entity

Pull Request - State: open - Opened by jweiser 10 months ago
Labels: enhancement

#54 - Add commandline runner to sliceQA pipeline

Issue - State: open - Opened by adamjohnwright over 1 year ago
Labels: enhancement

#53 - Two classes are still empty and need to be populated

Issue - State: open - Opened by adamjohnwright over 1 year ago
Labels: enhancement

#52 - Make sure _DeletedInstance is uptodate

Issue - State: open - Opened by adamjohnwright over 1 year ago
Labels: enhancement

#51 - Slicing Tool currently Update Tracker is throwing an error

Issue - State: open - Opened by adamjohnwright over 1 year ago
Labels: bug

#50 - Bump json from 20140107 to 20230227 in /reactome_base_sonatype

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#49 - Request - Dark mode

Issue - State: open - Opened by elserj over 1 year ago - 1 comment

#48 - Bump jackson-databind from 2.9.9 to 2.12.7.1 in /reactome_base_sonatype

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#47 - Bump jackson-databind from 2.9.9 to 2.13.4.1 in /reactome_base_sonatype

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#46 - Bump jackson-databind from 2.9.9 to 2.12.6.1 in /reactome_base_sonatype

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#45 - Bump mysql-connector-java from 5.1.47 to 8.0.28 in /reactome_base_sonatype

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#44 - Bump batik-util from 1.11 to 1.14 in /reactome_base_sonatype

Pull Request - State: open - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies

#43 - Bump jackson-databind from 2.9.9 to 2.9.10.8 in /reactome_base_sonatype

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#42 - updates IUPHAR name to Guide to Pharmacology

Pull Request - State: closed - Opened by jweiser about 3 years ago

#41 - fix browser setting

Issue - State: open - Opened by rwst over 3 years ago

#40 - better Help-->Curator Guide action

Issue - State: open - Opened by rwst over 3 years ago

#39 - update Report Bugs URI

Issue - State: open - Opened by rwst over 3 years ago

#38 - suggestion: add DOI importer for URL entities

Issue - State: open - Opened by rwst over 3 years ago

#37 - Fix qa checks using physical entity.compartment

Pull Request - State: closed - Opened by SolomonShorser-OICR over 3 years ago - 4 comments

#36 - Fix entity set compartment check

Pull Request - State: closed - Opened by SolomonShorser-OICR over 3 years ago - 1 comment

#35 - Bump jackson-databind from 2.9.9 to 2.9.10.7 in /reactome_base_sonatype

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#34 - Variant

Pull Request - State: closed - Opened by guanmingwu almost 4 years ago

#33 - Bump junit from 4.12 to 4.13.1 in /reactome_base_sonatype

Pull Request - State: open - Opened by dependabot[bot] about 4 years ago
Labels: dependencies

#32 - Batch create multimer

Pull Request - State: closed - Opened by lbeckman314 about 4 years ago - 1 comment

#31 - Checks if 'identifier' is a valid attribute in StableIdentifier

Pull Request - State: closed - Opened by cookersjs over 4 years ago - 1 comment

#30 - Bump mysql-connector-java from 5.1.47 to 8.0.16 in /reactome_base_sonatype

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#29 - Feature/dev 1837 and 1838

Pull Request - State: closed - Opened by cookersjs over 4 years ago - 1 comment

#28 - Drug disease

Pull Request - State: closed - Opened by lbeckman314 over 4 years ago

#27 - jnlp dependency breaks downstream projects

Issue - State: open - Opened by SolomonShorser-OICR almost 5 years ago - 5 comments

#25 - Feature/maven sonatype updates

Pull Request - State: closed - Opened by jweiser about 5 years ago

#24 - Update ReactomeJavaConstants.java

Pull Request - State: closed - Opened by jweiser about 5 years ago
Labels: enhancement

#23 - [DEV-1756] Implement drug type for Complex and EntitySet in CuratorTool

Pull Request - State: closed - Opened by lbeckman314 about 5 years ago - 2 comments

#22 - [DEV-1650] Auto-assign color purple to drugs and drug-related entities in the curator tool

Pull Request - State: closed - Opened by lbeckman314 about 5 years ago - 2 comments

#21 - Reactome base sonatype

Pull Request - State: closed - Opened by jweiser about 5 years ago - 8 comments
Labels: enhancement

#19 - Add value field to search pane for "Use REGEXP" option.

Pull Request - State: closed - Opened by lbeckman314 about 5 years ago

#18 - Tracking [DEV-1756]

Pull Request - State: closed - Opened by lbeckman314 about 5 years ago

#17 - Add "Does Not Contain" to Curator Tool search function.

Pull Request - State: closed - Opened by lbeckman314 about 5 years ago - 1 comment

#16 - Add uneditable classes.

Pull Request - State: closed - Opened by lbeckman314 about 5 years ago - 1 comment

#15 - Prevent curators from creating new instances of species, compartments.

Pull Request - State: closed - Opened by lbeckman314 about 5 years ago - 3 comments

#14 - Javadoc updates

Pull Request - State: closed - Opened by jweiser about 5 years ago - 2 comments
Labels: documentation

#13 - Continuous Integration Prototype

Pull Request - State: closed - Opened by lbeckman314 over 5 years ago

#12 - Version topic script

Pull Request - State: closed - Opened by jweiser almost 6 years ago

#11 - Web elv ant build

Pull Request - State: closed - Opened by jweiser almost 6 years ago

#10 - Ant build for WebELVTool missing some directories

Issue - State: open - Opened by cookersjs about 6 years ago

#9 - Fix constants

Pull Request - State: closed - Opened by SolomonShorser-OICR about 7 years ago

#8 - Species abbreviations

Pull Request - State: closed - Opened by jweiser about 7 years ago

#7 - Species abbreviations

Pull Request - State: closed - Opened by jweiser about 7 years ago - 3 comments

#6 - New tool to de-duplicate oldIdentifiers

Pull Request - State: closed - Opened by SolomonShorser-OICR almost 8 years ago - 1 comment

#5 - Release date fixer

Pull Request - State: closed - Opened by SolomonShorser-OICR about 8 years ago

#4 - Release date fixer

Pull Request - State: closed - Opened by SolomonShorser-OICR about 8 years ago

#3 - Bug fix: Avoid the reuse of IDs in the diagrams, which resulted in ha…

Pull Request - State: closed - Opened by ksidis about 8 years ago - 6 comments

#2 - Two database fixes: unicode and return keys

Pull Request - State: closed - Opened by SolomonShorser-OICR about 8 years ago

#1 - New OLS

Pull Request - State: closed - Opened by SolomonShorser-OICR over 8 years ago