rdk/p2rank issues and pull requests

#75 - exception in phase 'semantic analysis' in source unit

Issue - State: closed - Opened by veronicagamo 2 months ago - 2 comments
Labels: question

#73 - Fail or at least warn users if they try to use wrong combiation of (command,config,model)

Issue - State: open - Opened by rdk 5 months ago
Labels: enhancement

#72 - Rescoring of cif files generated by fpocket fails

Issue - State: closed - Opened by Yorick-126 5 months ago - 11 comments
Labels: bug, enhancement, question

#71 - incomplete test_output

Issue - State: closed - Opened by SusuSui 8 months ago - 4 comments

#70 - Different results compared to PrankWeb?

Issue - State: closed - Opened by AlexLam37 8 months ago - 2 comments

#69 - data input rescore

Issue - State: open - Opened by ClaraVanM 9 months ago - 7 comments
Labels: question

#68 - Pocket Volume Estimations

Issue - State: open - Opened by apl22 9 months ago - 2 comments
Labels: enhancement, question

#67 - installation not clear

Issue - State: closed - Opened by Canddya about 1 year ago

#66 - Use Silent instead of Data

Pull Request - State: closed - Opened by egonw about 1 year ago - 1 comment

#65 - Question about the preprocessing of PDB file.

Issue - State: closed - Opened by violet-sto about 1 year ago - 1 comment

#63 - No CSV output?

Issue - State: closed - Opened by lazear almost 2 years ago - 7 comments

#62 - No SLF4J providers were found!

Issue - State: closed - Opened by amarye almost 2 years ago - 5 comments

#61 - Dataset contains invalid files

Issue - State: closed - Opened by amarye almost 2 years ago - 2 comments

#60 - Stop Logging to Distribution Directory

Pull Request - State: closed - Opened by lilleswing about 2 years ago - 1 comment

#59 - [SUGGESTION] Release Binary Should Log To STDERR instead of to install directory

Issue - State: closed - Opened by lilleswing over 2 years ago - 1 comment
Labels: enhancement

#58 - File path in *.ds file

Issue - State: closed - Opened by JinyuanSun over 2 years ago - 3 comments
Labels: bug

#57 - dataset-joined pdb_residues file doesn`t match with fasta sequence

Issue - State: open - Opened by ProkopDivin over 2 years ago
Labels: bug

#56 - installation not clear?

Issue - State: closed - Opened by ghost over 2 years ago - 13 comments
Labels: question

#55 - Out of memory error

Issue - State: closed - Opened by AndreaSoltes over 2 years ago - 1 comment
Labels: question

#54 - Issue with loading mmCIF files created in PyMOL

Issue - State: closed - Opened by davidhoksza over 2 years ago - 4 comments
Labels: bug

#53 - easy way to get features

Issue - State: open - Opened by rohanvarm over 2 years ago - 2 comments
Labels: question

#52 - Building on WSL failing

Issue - State: closed - Opened by davidhoksza almost 3 years ago - 2 comments

#50 - Output directory parameter `-o` is sometimes ignored.

Issue - State: closed - Opened by rdk over 3 years ago - 1 comment
Labels: bug

#49 - Bug in -conservation_dirs argument parsing

Issue - State: closed - Opened by davidjakubec over 3 years ago - 2 comments

#48 - Extend and reorganize documentation

Issue - State: open - Opened by rdk about 4 years ago
Labels: documentation

#47 - Add README section abut P2Rank framework

Issue - State: open - Opened by rdk about 4 years ago
Labels: documentation

#46 - Add probability to output *_predictions.csv file

Issue - State: closed - Opened by rdk about 4 years ago - 1 comment

#45 - Make p2rank behave more like a standard unix program by default (wrt output location and working directory)

Issue - State: open - Opened by rdk about 4 years ago - 3 comments
Labels: enhancement

#44 - Java options unrecognized by OpenJDK 15

Issue - State: closed - Opened by davidhoksza about 4 years ago - 1 comment
Labels: bug

#43 - Any idea why there is a difference?

Issue - State: open - Opened by skodapetr about 4 years ago
Labels: question

#42 - Add README section about running dockerized version

Issue - State: open - Opened by davidhoksza about 4 years ago
Labels: documentation

#41 - Does p2rank require git ?

Issue - State: closed - Opened by skodapetr over 4 years ago - 1 comment

#40 - What are best practices to generating docking gridboxes from P2R points?

Issue - State: closed - Opened by 5xx7xx over 4 years ago - 2 comments
Labels: question

#39 - Log output change

Issue - State: closed - Opened by skodapetr over 4 years ago - 2 comments
Labels: question

#38 - Feature implementation not found: conserv

Issue - State: closed - Opened by skodapetr over 4 years ago - 3 comments
Labels: question

#37 - failFast for conservation

Issue - State: closed - Opened by skodapetr over 4 years ago - 1 comment

#36 - Improve behaviour - wrong parameters

Issue - State: closed - Opened by sykoram over 4 years ago - 2 comments
Labels: enhancement

#35 - ResidueNumberWrapper ignore chain ?

Issue - State: closed - Opened by skodapetr over 4 years ago - 3 comments
Labels: bug

#34 - Implement csv-feature

Pull Request - State: closed - Opened by skodapetr over 4 years ago - 6 comments

#33 - How to train with conservation (Add parameter -conservation_dir_train)

Issue - State: closed - Opened by skodapetr over 4 years ago - 5 comments
Labels: enhancement

#32 - Use dot as decimal separator regardless of locale

Pull Request - State: closed - Opened by skodapetr over 4 years ago - 1 comment

#31 - Thread count limitation

Issue - State: closed - Opened by skodapetr over 4 years ago - 3 comments

#30 - How does predict-eval work

Issue - State: closed - Opened by skodapetr over 4 years ago - 4 comments
Labels: question

#29 - Invalid format and content of runs_pred.csv

Issue - State: closed - Opened by skodapetr over 4 years ago

#28 - hyperparameter optimization tutorial

Issue - State: closed - Opened by skodapetr over 4 years ago - 3 comments
Labels: question

#27 - Note should not be in the text

Issue - State: closed - Opened by skodapetr over 4 years ago - 1 comment

#26 - Case-study to extra file

Issue - State: closed - Opened by skodapetr over 4 years ago - 1 comment

#25 - Fpocket in tutorial

Issue - State: closed - Opened by skodapetr over 4 years ago - 1 comment

#24 - What is a huge dataset?

Issue - State: closed - Opened by skodapetr over 4 years ago - 1 comment
Labels: question

#22 - PyMOL output file names are not quoted

Issue - State: closed - Opened by davidhoksza almost 5 years ago - 1 comment

#21 - exception: Not enough training instances with class labels

Issue - State: closed - Opened by skodapetr almost 5 years ago - 3 comments