Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / rbchan/unmarked issues and pull requests

#282 - New simulate and power analysis interfaces

Pull Request - State: closed - Opened by kenkellner 3 months ago

#281 - nmixTTD getP method

Issue - State: open - Opened by kenkellner 5 months ago

#280 - Simplify simulate method

Issue - State: closed - Opened by kenkellner 5 months ago

#279 - Improve pcount likelihood calculations

Issue - State: open - Opened by kenkellner 5 months ago

#278 - Bug in `fitted` for Dail-Madsen models with `dynamics="gompertz"`

Issue - State: closed - Opened by kenkellner 6 months ago - 5 comments

#277 - Don't use subcube in gmultmix likelihood

Issue - State: open - Opened by kenkellner 7 months ago

#276 - Refactor gdistsamp likelihood to avoid occasional crashes

Pull Request - State: closed - Opened by kenkellner 7 months ago

#275 - Default K calculations for distance sampling models are incorrect

Issue - State: closed - Opened by kenkellner 8 months ago - 5 comments

#274 - Add `ranef` support to IDS

Issue - State: open - Opened by kenkellner 8 months ago

#273 - Add IDS fitting function

Pull Request - State: closed - Opened by kenkellner 9 months ago

#272 - Fix methods documentation mess

Issue - State: open - Opened by kenkellner 9 months ago

#267 - Add occuCOP: occupancy model with count data

Pull Request - State: closed - Opened by leapautrel 10 months ago

#266 - Remove lme4

Pull Request - State: open - Opened by kenkellner 10 months ago

#265 - Problems with TMB/Matrix in Github actions

Issue - State: closed - Opened by kenkellner 11 months ago - 1 comment

#264 - Increase required R version to 4.0

Pull Request - State: closed - Opened by waltersom 11 months ago - 1 comment

#263 - Minimum R version required should be 4.0

Issue - State: closed - Opened by waltersom 11 months ago

#261 - Add multistate occupancy model (goccu)

Pull Request - State: closed - Opened by kenkellner about 1 year ago

#260 - Add ZIP support to gdistsamp, gmultmix, and gpcount

Pull Request - State: closed - Opened by kenkellner about 1 year ago

#258 - New CRAN cpp warnings

Issue - State: closed - Opened by kenkellner over 1 year ago

#257 - ZIP support for nmixTTD (needs work)

Pull Request - State: closed - Opened by kenkellner over 1 year ago

#255 - Problem with `[` methods

Issue - State: closed - Opened by kenkellner over 1 year ago - 2 comments

#254 - Moving IDS code to the the main repository

Pull Request - State: closed - Opened by kenkellner over 1 year ago

#253 - Copy lme4 code into package, instead of importing it

Issue - State: open - Opened by kenkellner over 1 year ago - 2 comments

#252 - Support discrete version of data in occuTTD

Issue - State: open - Opened by kenkellner over 1 year ago

#250 - Random effects vignette

Issue - State: open - Opened by kenkellner over 1 year ago

#248 - Add option to fitList to auto-name models based on their formulas

Pull Request - State: closed - Opened by kenkellner over 1 year ago

#247 - Add plotEffects function

Pull Request - State: closed - Opened by kenkellner over 1 year ago

#246 - R session aborted when run occu with covariates

Issue - State: closed - Opened by TSchriever over 1 year ago - 4 comments

#245 - summary() doesn't show random effect variances/SDs

Issue - State: closed - Opened by kenkellner over 1 year ago

#244 - Add na.rm=TRUE to fitstats function

Issue - State: closed - Opened by kenkellner almost 2 years ago

#243 - gmultmix getP fails when there is only 1 site

Issue - State: closed - Opened by kenkellner almost 2 years ago

#242 - Add Shiny app for power analysis and improve the associated vignette.

Pull Request - State: closed - Opened by kenkellner almost 2 years ago

#241 - Add error handling to parboot

Pull Request - State: closed - Opened by kenkellner almost 2 years ago

#240 - Refactor gmultmix likelihood function

Issue - State: closed - Opened by kenkellner almost 2 years ago - 4 comments

#239 - Catch crashes in parboot

Issue - State: closed - Opened by kenkellner about 2 years ago - 1 comment

#237 - Fails to compile when using update.packages() on Ubuntu Linux

Issue - State: closed - Opened by PowellWheeler about 2 years ago - 2 comments

#236 - Small typo in documentation for formatDistData

Issue - State: closed - Opened by meriops over 2 years ago - 1 comment

#234 - Fix some problems with colext and occuMulti vignettes

Pull Request - State: closed - Opened by kenkellner over 2 years ago

#233 - Remove plyr as dependency

Pull Request - State: closed - Opened by kenkellner over 2 years ago

#232 - Improve starting values

Issue - State: open - Opened by rbchan over 2 years ago

#231 - Move methods back to imports

Issue - State: closed - Opened by kenkellner over 2 years ago - 2 comments

#230 - Refactor predict code

Pull Request - State: closed - Opened by kenkellner over 2 years ago

#229 - Change unmarkedFitDSO inheritance

Issue - State: closed - Opened by kenkellner over 2 years ago

#228 - Fix warnings on CRAN before resubmission

Issue - State: closed - Opened by kenkellner over 2 years ago - 1 comment

#227 - Add additional tests

Pull Request - State: closed - Opened by kenkellner over 2 years ago

#226 - Update tests to use testthat

Pull Request - State: closed - Opened by kenkellner over 2 years ago

#225 - Move raster from imports to suggests

Issue - State: closed - Opened by kenkellner over 2 years ago

#224 - Use message() instead of cat() in predict methods for occuMulti/occuMS

Issue - State: closed - Opened by kenkellner almost 3 years ago - 1 comment

#221 - More informative error messages when specifying an incorrect type with predict

Issue - State: closed - Opened by kenkellner almost 3 years ago - 1 comment

#220 - Fix minimum possible K value in distsampOpen

Issue - State: closed - Opened by kenkellner almost 3 years ago

#219 - Add random effects vignette

Pull Request - State: closed - Opened by kenkellner almost 3 years ago

#218 - Add occuMulti vignette

Pull Request - State: closed - Opened by kenkellner almost 3 years ago

#217 - Look into Windows build problem

Issue - State: closed - Opened by kenkellner almost 3 years ago

#216 - vcov errors when called on a model with random effects

Issue - State: closed - Opened by kenkellner almost 3 years ago

#215 - Allow passing a list of previously simulated datasets to powerAnalysis

Pull Request - State: closed - Opened by kenkellner almost 3 years ago

#213 - Speed up predict by doing calculations in batches

Pull Request - State: closed - Opened by kenkellner about 3 years ago

#212 - Add power analysis and simulation tools

Pull Request - State: closed - Opened by kenkellner about 3 years ago

#211 - Suggested changes in predict() for 50x speedup

Issue - State: closed - Opened by jniedballa about 3 years ago - 15 comments

#210 - TMB engines for distsamp, multinomPois, and gdistremoval

Pull Request - State: closed - Opened by kenkellner about 3 years ago

#209 - Add option for penalized likelihood to occuMulti

Pull Request - State: closed - Opened by kenkellner about 3 years ago

#208 - Add progress bar to parametric bootstraps and cross-validations

Pull Request - State: closed - Opened by adamdsmith about 3 years ago

#207 - TMB random effects refactor

Pull Request - State: closed - Opened by kenkellner over 3 years ago

#206 - Add RcppEigen to LinkingTo

Issue - State: closed - Opened by Enchufa2 over 3 years ago - 1 comment

#205 - Add gdistremoval function

Pull Request - State: closed - Opened by kenkellner over 3 years ago

#204 - error in ranef() for multmixOpen objects

Issue - State: open - Opened by dslramsey over 3 years ago - 2 comments

#203 - Fix ASAN problems reported by CRAN

Pull Request - State: closed - Opened by kenkellner over 3 years ago

#202 - Define STRICT_R_HEADERS and fix resulting problems

Pull Request - State: closed - Opened by kenkellner over 3 years ago - 1 comment

#201 - STRICT_R_HEADERS

Issue - State: closed - Opened by kenkellner over 3 years ago

#200 - Add support for random effects to occu and pcount

Pull Request - State: closed - Opened by kenkellner over 3 years ago - 2 comments

#199 - fitList construction fails when maxOrder is set for an occuMulti model

Issue - State: closed - Opened by kenkellner over 3 years ago - 1 comment

#198 - Check validity of unmarkedMultFrames

Issue - State: closed - Opened by kenkellner over 3 years ago

#197 - Add nmixTTD fitting function

Pull Request - State: closed - Opened by kenkellner over 3 years ago - 1 comment

#196 - Use Github actions for continuous integration

Issue - State: closed - Opened by kenkellner almost 4 years ago - 3 comments

#195 - Add openMP support to some functions

Pull Request - State: closed - Opened by kenkellner almost 4 years ago

#194 - occuTTD: don't drop 3rd dimension of ranef output

Issue - State: closed - Opened by kenkellner almost 4 years ago - 1 comment

#193 - occuTTD: Add warning in docs about absolute values of times

Issue - State: closed - Opened by kenkellner about 4 years ago - 1 comment

#191 - Use mvrnorm for bootstrapping occuMulti prediction CIs

Pull Request - State: closed - Opened by kenkellner about 4 years ago

#190 - More occuMulti predict problems

Issue - State: closed - Opened by kenkellner about 4 years ago

#189 - Add OpenMP support

Issue - State: closed - Opened by rbchan about 4 years ago - 11 comments

#188 - multmixOpen() error when "immigration = TRUE"

Issue - State: closed - Opened by dslramsey about 4 years ago - 2 comments

#187 - Very small error on colext vignette?

Issue - State: closed - Opened by jabiologo over 4 years ago - 1 comment

#186 - Predict with `gdistsamp` output

Issue - State: closed - Opened by mikemeredith over 4 years ago - 2 comments

#185 - Problems with predict and pcountOpen

Issue - State: closed - Opened by cschwarz-stat-sfu-ca over 4 years ago - 2 comments

#184 - pcountOpen example no longer works

Issue - State: closed - Opened by cschwarz-stat-sfu-ca over 4 years ago - 3 comments