rbchan/unmarked issues and pull requests

#282 - New simulate and power analysis interfaces

Pull Request - State: closed - Opened by kenkellner 7 months ago

#281 - nmixTTD getP method

Issue - State: open - Opened by kenkellner 8 months ago

#280 - Simplify simulate method

Issue - State: closed - Opened by kenkellner 8 months ago

#279 - Improve pcount likelihood calculations

Issue - State: open - Opened by kenkellner 9 months ago

#278 - Bug in `fitted` for Dail-Madsen models with `dynamics="gompertz"`

Issue - State: closed - Opened by kenkellner 10 months ago - 5 comments

#277 - Don't use subcube in gmultmix likelihood

Issue - State: open - Opened by kenkellner 11 months ago

#276 - Refactor gdistsamp likelihood to avoid occasional crashes

Pull Request - State: closed - Opened by kenkellner 11 months ago

#275 - Default K calculations for distance sampling models are incorrect

Issue - State: closed - Opened by kenkellner 12 months ago - 5 comments

#274 - Add `ranef` support to IDS

Issue - State: open - Opened by kenkellner about 1 year ago

#273 - Add IDS fitting function

Pull Request - State: closed - Opened by kenkellner about 1 year ago

#272 - Fix methods documentation mess

Issue - State: open - Opened by kenkellner about 1 year ago

#271 - summary(umf) returns confusing or incorrect statistics on number of observations

Issue - State: open - Opened by kenkellner about 1 year ago

#270 - `parboot` should have a more informative error if all fits to simulated datasets failed

Issue - State: closed - Opened by kenkellner about 1 year ago

#269 - `unmarkedFrame` class for continuous-time models (`unmarkedFrameContinuous`)

Issue - State: open - Opened by leapautrel about 1 year ago - 2 comments

#268 - `confint` displays a bunch of blank rows when there are random effects in the submodel

Issue - State: closed - Opened by kenkellner about 1 year ago

#267 - Add occuCOP: occupancy model with count data

Pull Request - State: closed - Opened by leapautrel about 1 year ago

#266 - Remove lme4

Pull Request - State: open - Opened by kenkellner about 1 year ago

#265 - Problems with TMB/Matrix in Github actions

Issue - State: closed - Opened by kenkellner about 1 year ago - 1 comment

#264 - Increase required R version to 4.0

Pull Request - State: closed - Opened by waltersom about 1 year ago - 1 comment

#263 - Minimum R version required should be 4.0

Issue - State: closed - Opened by waltersom about 1 year ago

#262 - Support discrete time bin version of nmixTTD a la Strebel et al. 2021 Methods in E and E

Issue - State: open - Opened by kjloope over 1 year ago - 1 comment

#261 - Add multistate occupancy model (goccu)

Pull Request - State: closed - Opened by kenkellner over 1 year ago

#260 - Add ZIP support to gdistsamp, gmultmix, and gpcount

Pull Request - State: closed - Opened by kenkellner over 1 year ago

#259 - model.frame will look for covariates in global environment if they aren't in the covariate data frame

Issue - State: open - Opened by kenkellner over 1 year ago - 1 comment

#258 - New CRAN cpp warnings

Issue - State: closed - Opened by kenkellner over 1 year ago

#257 - ZIP support for nmixTTD (needs work)

Pull Request - State: closed - Opened by kenkellner over 1 year ago

#256 - Add code for ZIP distribution with gdistsamp, still needs some work on methods

Pull Request - State: closed - Opened by kenkellner over 1 year ago

#255 - Problem with `[` methods

Issue - State: closed - Opened by kenkellner over 1 year ago - 2 comments

#254 - Moving IDS code to the the main repository

Pull Request - State: closed - Opened by kenkellner over 1 year ago

#253 - Copy lme4 code into package, instead of importing it

Issue - State: open - Opened by kenkellner over 1 year ago - 2 comments

#252 - Support discrete version of data in occuTTD

Issue - State: open - Opened by kenkellner almost 2 years ago

#251 - Show handling of NAs in simulate/power analysis vignettes

Issue - State: open - Opened by kenkellner almost 2 years ago

#250 - Random effects vignette

Issue - State: open - Opened by kenkellner almost 2 years ago

#249 - Add support for predicting with terra::rast (SpatRaster) objects as the newdata

Pull Request - State: closed - Opened by kenkellner almost 2 years ago

#248 - Add option to fitList to auto-name models based on their formulas

Pull Request - State: closed - Opened by kenkellner almost 2 years ago

#247 - Add plotEffects function

Pull Request - State: closed - Opened by kenkellner almost 2 years ago

#246 - R session aborted when run occu with covariates

Issue - State: closed - Opened by TSchriever about 2 years ago - 4 comments

#245 - summary() doesn't show random effect variances/SDs

Issue - State: closed - Opened by kenkellner about 2 years ago

#244 - Add na.rm=TRUE to fitstats function

Issue - State: closed - Opened by kenkellner about 2 years ago

#243 - gmultmix getP fails when there is only 1 site

Issue - State: closed - Opened by kenkellner about 2 years ago

#242 - Add Shiny app for power analysis and improve the associated vignette.

Pull Request - State: closed - Opened by kenkellner about 2 years ago

#241 - Add error handling to parboot

Pull Request - State: closed - Opened by kenkellner over 2 years ago

#240 - Refactor gmultmix likelihood function

Issue - State: closed - Opened by kenkellner over 2 years ago - 4 comments

#239 - Catch crashes in parboot

Issue - State: closed - Opened by kenkellner over 2 years ago - 1 comment

#238 - Allow simulating datasets with random effects for model types that support it

Pull Request - State: closed - Opened by kenkellner over 2 years ago

#237 - Fails to compile when using update.packages() on Ubuntu Linux

Issue - State: closed - Opened by PowellWheeler over 2 years ago - 2 comments

#236 - Small typo in documentation for formatDistData

Issue - State: closed - Opened by meriops over 2 years ago - 1 comment

#235 - simulate for distsamp and multinomPois ignores random effects

Issue - State: closed - Opened by kenkellner over 2 years ago

#234 - Fix some problems with colext and occuMulti vignettes

Pull Request - State: closed - Opened by kenkellner over 2 years ago

#233 - Remove plyr as dependency

Pull Request - State: closed - Opened by kenkellner over 2 years ago

#232 - Improve starting values

Issue - State: open - Opened by rbchan over 2 years ago

#231 - Move methods back to imports

Issue - State: closed - Opened by kenkellner almost 3 years ago - 2 comments

#230 - Refactor predict code

Pull Request - State: closed - Opened by kenkellner almost 3 years ago

#229 - Change unmarkedFitDSO inheritance

Issue - State: closed - Opened by kenkellner almost 3 years ago

#228 - Fix warnings on CRAN before resubmission

Issue - State: closed - Opened by kenkellner almost 3 years ago - 1 comment

#227 - Add additional tests

Pull Request - State: closed - Opened by kenkellner almost 3 years ago

#226 - Update tests to use testthat

Pull Request - State: closed - Opened by kenkellner almost 3 years ago

#225 - Move raster from imports to suggests

Issue - State: closed - Opened by kenkellner almost 3 years ago

#224 - Use message() instead of cat() in predict methods for occuMulti/occuMS

Issue - State: closed - Opened by kenkellner about 3 years ago - 1 comment

#223 - multinomPois and occuRN simulate methods generates an incorrect-sized dataset when there are missing values in covariates

Issue - State: closed - Opened by kenkellner about 3 years ago - 1 comment

#222 - Throw error when unmarkedFrameGMM/MPois with type depDouble has !=2 columns per primary period

Issue - State: closed - Opened by kenkellner about 3 years ago

#221 - More informative error messages when specifying an incorrect type with predict

Issue - State: closed - Opened by kenkellner about 3 years ago - 1 comment

#220 - Fix minimum possible K value in distsampOpen

Issue - State: closed - Opened by kenkellner about 3 years ago

#219 - Add random effects vignette

Pull Request - State: closed - Opened by kenkellner about 3 years ago

#218 - Add occuMulti vignette

Pull Request - State: closed - Opened by kenkellner about 3 years ago

#217 - Look into Windows build problem

Issue - State: closed - Opened by kenkellner about 3 years ago