razorx89/pydicom-seg issues and pull requests

#60 - pydicom 3.0 remove pydicom._storage_sopclass_uids

Issue - State: open - Opened by ivantyj 2 months ago

#59 - How to export multiclass segmentation, it becomes binary after exporting

Issue - State: closed - Opened by qq-me 7 months ago - 1 comment

#58 - Support for writing multi-label segmentations

Issue - State: open - Opened by SteEcker 9 months ago

#57 - Segmentation shape is not the same as the original image shape

Issue - State: open - Opened by melaniezhang 10 months ago

#56 - dependency issue with jsonschema

Issue - State: open - Opened by kirbyju 10 months ago

#55 - support for RTSTRUCT modalities

Issue - State: open - Opened by hosseinjafar about 1 year ago

#54 - Replace poetry with poetry-core

Pull Request - State: open - Opened by tjni over 1 year ago

#53 - Filling in empty slices

Issue - State: open - Opened by junxiant over 1 year ago

#52 - Fix segment numbering

Pull Request - State: open - Opened by razorx89 over 1 year ago

#51 - Add fractional writer

Pull Request - State: closed - Opened by razorx89 over 1 year ago

#50 - dcmtk expects monotonically increasing SegmentNumber

Issue - State: open - Opened by razorx89 over 1 year ago
Labels: bug

#49 - Can we upgrade jsonschema to 4.x version

Issue - State: open - Opened by SachidanandAlle over 1 year ago

#48 - Imported FrameOfReferenceUID overwritten

Issue - State: open - Opened by MaartenDeMeyer over 1 year ago

#47 - ClinicalTrialSeriesID and ClinicalTrialTimePointID considered mandatory

Issue - State: open - Opened by MaartenDeMeyer over 1 year ago

#46 - Fix CI pipeline

Pull Request - State: closed - Opened by razorx89 almost 2 years ago

#45 - Writing Fractional Segmentations

Issue - State: closed - Opened by roger-schaer about 2 years ago - 13 comments

#44 - First draft of speedup adding frames

Pull Request - State: closed - Opened by LeonhardFeiner almost 3 years ago - 3 comments

#43 - Fixed rounding error for calculating number of slices in both readers

Pull Request - State: closed - Opened by LeonhardFeiner almost 3 years ago - 1 comment

#42 - ReferencedSeriesSequence tag missing via using writer to generate a dicom seg from a numpy array

Issue - State: closed - Opened by wiekern almost 3 years ago - 4 comments

#41 - Is it possible to have overlapping segmentation?

Issue - State: open - Opened by a-parida12 almost 3 years ago - 3 comments

#40 - Number of Frames Errors

Issue - State: closed - Opened by ryanmdavis about 3 years ago - 2 comments

#39 - Support reading into ITK images (and not just SimpleITK images)

Issue - State: open - Opened by aylward about 3 years ago

#38 - Segmentation on series that has several ImageOrientationPatient

Issue - State: open - Opened by sinanmb over 3 years ago - 10 comments
Labels: enhancement

#37 - PixelSpacing read incorrectly

Issue - State: closed - Opened by razorx89 over 3 years ago
Labels: bug

#36 - Fix/template code sequences

Pull Request - State: closed - Opened by razorx89 over 3 years ago

#35 - FIX: Clear segment_buffer for every segment in SegmentReader

Pull Request - State: closed - Opened by jpeoples over 3 years ago - 1 comment

#34 - Dicom Slice Thickness always 0

Issue - State: open - Opened by kkmehta03 over 3 years ago - 1 comment

#33 - Optional AnatomicRegionSequence metadata does not work

Issue - State: closed - Opened by paulredman- over 3 years ago - 1 comment

#32 - Creating an empty segmentation

Issue - State: open - Opened by vsaase over 3 years ago - 3 comments

#31 - Add pre-commit configuration to enforce code style and checks

Pull Request - State: closed - Opened by razorx89 over 3 years ago

#30 - Segment Identification Sequence is required in Shared Functional Groups Sequence

Issue - State: closed - Opened by vsaase almost 4 years ago - 2 comments

#29 - Unable to view rtstruct using software

Issue - State: closed - Opened by reubenwenisch almost 4 years ago - 2 comments

#28 - ContentCreatorName is hardcoded to pydicom_seg

Issue - State: closed - Opened by vanossj almost 4 years ago - 1 comment

#27 - use ContentCreatorName from template

Pull Request - State: closed - Opened by vanossj almost 4 years ago - 1 comment

#26 - Add support for SimpleITK >= 2.0

Issue - State: closed - Opened by coertmetz almost 4 years ago - 5 comments

#25 - Add default preamble to segmentation dataset

Pull Request - State: closed - Opened by razorx89 about 4 years ago

#24 - Example code for writing DICOM seg does not write a preable

Issue - State: closed - Opened by coertmetz about 4 years ago - 1 comment

#23 - Update write.rst

Pull Request - State: closed - Opened by coertmetz about 4 years ago

#22 - Unable to save a multi-class segmentation out of the box

Issue - State: closed - Opened by PatrikBrynolfsson over 4 years ago - 7 comments

#21 - FIX: DICOM conformance / OHIF compatibility

Pull Request - State: closed - Opened by razorx89 over 4 years ago

#20 - Generated DICOM is not valid / OHIF Viewer fails to load

Issue - State: closed - Opened by razorx89 over 4 years ago - 1 comment
Labels: bug

#19 - ENH: Add mypy for static type checking

Pull Request - State: closed - Opened by razorx89 over 4 years ago

#18 - Add support for loading SurfaceSegmentation DICOMs

Issue - State: open - Opened by razorx89 over 4 years ago - 2 comments
Labels: enhancement

#17 - Fix: Template import from single-file input metainfo.json

Pull Request - State: closed - Opened by razorx89 over 4 years ago

#16 - SeriesInstanceUID necessary in the generated file?

Issue - State: closed - Opened by roger-schaer over 4 years ago - 2 comments

#15 - Fix externals missing in wheel

Pull Request - State: closed - Opened by razorx89 over 4 years ago

#14 - Bug with the creation of a "SegmentSequence" with multiple elements

Issue - State: closed - Opened by roger-schaer over 4 years ago - 7 comments
Labels: bug

#13 - Installation with PIP (Python 3) is missing the "externals" folder with the JSON schema

Issue - State: closed - Opened by roger-schaer over 4 years ago - 3 comments
Labels: bug