raphael-group/paste issues and pull requests

#43 - All the element in OT matrix are the same

Issue - State: open - Opened by DruncBread 25 days ago

#42 - Alignment Order

Issue - State: open - Opened by DruncBread 26 days ago

#41 - Issue with pairwise_align: numItermax Warning and Suboptimal Alignment

Issue - State: open - Opened by Yin-XN 2 months ago - 4 comments

#40 - How to plot the aligned image on top of the tissue image?

Issue - State: open - Opened by quiquevb23 5 months ago - 1 comment

#39 - Which version of torch is compatible?

Issue - State: open - Opened by Li-ZhiD 8 months ago

#38 - the rank of the aligned matrix

Issue - State: open - Opened by zhoumeng123456 9 months ago

#37 - Some questions about PAA metric

Issue - State: closed - Opened by liuchunlei0430 about 1 year ago - 1 comment

#36 - Dealing with large datasets on GPU

Issue - State: open - Opened by legbar over 1 year ago - 1 comment

#35 - Inconsistent gene expression positions before and after integration

Issue - State: closed - Opened by yuntwang over 1 year ago - 4 comments

#34 - How to Understand the Superhigh Number of Median Genes

Issue - State: closed - Opened by yuntwang over 1 year ago - 2 comments

#33 - TypeError: cg() got multiple values for argument 'numItermax'

Issue - State: closed - Opened by Tako-liu over 1 year ago - 7 comments

#32 - how to cluster the spots in PASTE integrated slice

Issue - State: closed - Opened by yuntwang over 1 year ago - 1 comment

#31 - Not able to run center_align due to an attribute error

Issue - State: closed - Opened by KSimi7 almost 2 years ago - 8 comments

#30 - module 'ot.gromov' has no attribute 'cg'

Issue - State: closed - Opened by JLiLab almost 2 years ago - 1 comment

#29 - Could PASTE been used with Vizgen data ?

Issue - State: closed - Opened by anidj almost 2 years ago - 1 comment

#28 - inconsistencies in the computation of cost matrices

Issue - State: open - Opened by giovp about 2 years ago

#27 - Max number of iteration reached for pairwise_align()

Issue - State: closed - Opened by aaadc about 2 years ago - 1 comment

#26 - assert slices are valid

Pull Request - State: closed - Opened by giovp about 2 years ago

#25 - running paste on cpu

Issue - State: closed - Opened by giovp about 2 years ago - 4 comments

#24 - Issues with spatial initial mapping

Issue - State: closed - Opened by Nuwaisir-1998 over 2 years ago - 1 comment

#23 - pairwise alignement on H&E images

Issue - State: closed - Opened by sophieRAIBAUD over 2 years ago - 8 comments

#22 - Extracting the rotation matrix from `stack_slices_pairwise`

Pull Request - State: closed - Opened by leoguignard over 2 years ago

#21 - Extracting the rotation matrix from `stack_slices_pairwise`

Issue - State: closed - Opened by leoguignard over 2 years ago - 4 comments

#20 - Issue on loading slices

Issue - State: closed - Opened by CHAOYiming over 2 years ago - 8 comments

#19 - What does this mean when running a program that generates？

Issue - State: closed - Opened by hzongyao almost 3 years ago - 1 comment

#18 - How to understand the meaning of mapping value in the result file？

Issue - State: closed - Opened by hzongyao almost 3 years ago - 1 comment

#17 - How to get the gene expression matrix of the center object for the subsequent cluster analysis?

Issue - State: closed - Opened by hzongyao almost 3 years ago - 1 comment

#16 - General Question

Issue - State: closed - Opened by sistia01 almost 3 years ago - 1 comment

#15 - update code to add readthedocs

Pull Request - State: closed - Opened by mrland99 almost 3 years ago

#14 - Update docstrings and add type hints

Pull Request - State: closed - Opened by mrland99 almost 3 years ago

#13 - fixing a misspelled word in the README

Pull Request - State: closed - Opened by ibebrett about 3 years ago - 1 comment