Ecosyste.ms: Issues

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GitHub / ramiromagno/gwasrapidd issues and pull requests

#52 - with_mock() is going away

Issue - State: open - Opened by hadley 21 days ago

#51 - Can get_associations search variant_id return Pubmed ID?

Issue - State: closed - Opened by z1242099843 about 1 month ago - 3 comments

#50 - [Error code 500] get_associations

Issue - State: open - Opened by jyjo43043ver1 3 months ago - 1 comment

#49 - [Error] response code was 500

Issue - State: closed - Opened by jyjo43043ver1 3 months ago - 3 comments

#48 - to get a vairants list from GWAS catalog

Issue - State: closed - Opened by GGboy-Zzz 7 months ago - 4 comments

#47 - How download TSV file like on the web GWAS Catalog？or any function can do like that？

Issue - State: closed - Opened by sher-l about 1 year ago - 5 comments
Labels: documentation

#46 - `get_studies()` not returning a scores object with efo id `"MONDO_0004648"`

Issue - State: closed - Opened by ramiromagno about 1 year ago
Labels: bug

#45 - FR: Add export functionality for gwasrapidd objects: `write_xlsx()`

Issue - State: closed - Opened by ramiromagno over 1 year ago
Labels: enhancement

#44 - How do I export `my_associations` to a table file, separated by tabs

Issue - State: closed - Opened by Zheng19w over 1 year ago - 8 comments

#43 - The associations number obtained by "gwasrapidd" differs extremly from obtained in GWAS Catalog

Issue - State: closed - Opened by shenlan17 over 1 year ago - 4 comments
Labels: question

#42 - Why are some gene names present in `genomic_contexts` but not in `ensembl_ids`?

Issue - State: closed - Opened by mzzclb over 1 year ago - 7 comments
Labels: question

#40 - List of Variants to GWAS associations

Issue - State: closed - Opened by lizlitkowski over 1 year ago - 3 comments

#39 - Error when running get_associations()

Issue - State: closed - Opened by mightyphil2000 almost 2 years ago - 4 comments

#38 - About failing download the studies of "get_studies()“

Issue - State: closed - Opened by huyou0916 almost 2 years ago - 6 comments

#37 - Fix for dev purrr

Pull Request - State: closed - Opened by hadley over 2 years ago - 1 comment

#36 - Response code was 500.

Issue - State: closed - Opened by james-cranley over 2 years ago - 3 comments

#35 - Error: parse error: premature EOF in study responses

Issue - State: closed - Opened by ramiromagno over 2 years ago

#34 - consider transitioning to the (not so) new pkgdown website template

Issue - State: closed - Opened by ramiromagno over 2 years ago - 2 comments

#33 - revisit FAQ 5

Issue - State: open - Opened by ramiromagno over 2 years ago - 1 comment

#32 - institutional logo not rendered in footer

Issue - State: closed - Opened by ramiromagno over 2 years ago

#31 - The most efficient way to retrieve association results by study_id?

Issue - State: closed - Opened by totajuliusd over 2 years ago - 2 comments

#30 - GRASP: Genome-Wide Repository of Associations Between SNPs and Phenotypes

Issue - State: closed - Opened by Shicheng-Guo about 3 years ago - 4 comments

#29 - Gwascatcollect<-function(gene, chr=xx, start=xx, end=xx)

Issue - State: closed - Opened by Shicheng-Guo about 3 years ago - 3 comments

#28 - parsing issue while using get_variants()

Issue - State: closed - Opened by peranti about 3 years ago - 9 comments

#27 - Fix class-associations.R

Pull Request - State: closed - Opened by peranti about 3 years ago
Labels: documentation

#26 - Fix assocaitions-class.Rd

Pull Request - State: closed - Opened by peranti about 3 years ago - 2 comments
Labels: documentation

#25 - Response code 500 when using get_studies()

Issue - State: closed - Opened by mightyphil2000 about 3 years ago - 8 comments

#24 - Is it possible to add additional gene information?

Issue - State: closed - Opened by peranti over 3 years ago - 4 comments

#23 - Extract other information using gwasrapidd

Issue - State: closed - Opened by jiyue1214 over 3 years ago - 1 comment

#22 - NCBI build conversion

Issue - State: closed - Opened by jinjinzhou over 3 years ago - 8 comments

#20 - discrepancies between get_variant and get_association

Issue - State: closed - Opened by mightyphil2000 over 3 years ago - 10 comments

#19 - get_associations using reported trait

Issue - State: closed - Opened by mightyphil2000 over 3 years ago - 7 comments

#18 - Very Small P Values are Rounded to 0

Issue - State: closed - Opened by MattCloward almost 4 years ago - 2 comments

#17 - Make functions that search by either `efo_trait` or `reported_trait` case sensitive again

Issue - State: closed - Opened by ramiromagno about 4 years ago
Labels: enhancement

#15 - Fix documentation of `cytogenetic_bands`

Issue - State: closed - Opened by ramiromagno about 4 years ago
Labels: documentation

#14 - Update documentation of `exists_variant()`

Issue - State: closed - Opened by ramiromagno about 4 years ago
Labels: documentation

#13 - Error in get_studies

Issue - State: closed - Opened by alexb-84 about 4 years ago - 5 comments
Labels: bug

#12 - Problems with ensembl_id

Issue - State: closed - Opened by abhiachoudhary about 4 years ago - 15 comments
Labels: bug

#11 - How to get non-unioned results when using a list as a parameter?

Issue - State: closed - Opened by MattCloward about 4 years ago - 5 comments
Labels: question

#10 - Link association_id, study_id and ancestry_id

Issue - State: closed - Opened by mightyphil2000 about 4 years ago - 7 comments
Labels: question

#9 - Regular expression in function is_study_id no longer works for newest studies

Issue - State: closed - Opened by MattCloward over 4 years ago - 3 comments
Labels: bug

#8 - Functions for identifier mapping needed

Issue - State: closed - Opened by ramiromagno over 4 years ago
Labels: enhancement

#7 - Error in as.vector(x) : no method for coercing this S4 class to a vector

Issue - State: open - Opened by ramiromagno almost 5 years ago
Labels: bug, help wanted

#6 - "get_variants" query error

Issue - State: closed - Opened by tzup almost 5 years ago - 5 comments
Labels: bug

#5 - Bug in example

Issue - State: closed - Opened by jennysjaarda about 5 years ago - 6 comments
Labels: bug

#4 - `cols` is now required. Please use `cols

Issue - State: closed - Opened by ramiromagno over 5 years ago
Labels: bug

#3 - Refactor parsing functions to use `purrr::pluck()`

Issue - State: open - Opened by ramiromagno over 5 years ago - 1 comment
Labels: enhancement

#2 - Hyperlink DOIs to preferred resolver

Pull Request - State: closed - Opened by katrinleinweber over 5 years ago - 2 comments

#1 - get_snp_by_id and get_snp_by_location not working for rs35252396 and rs6470588

Issue - State: closed - Opened by ramiromagno about 6 years ago - 1 comment
Labels: bug